List of databases for oncogenomic research

Databases for oncogenomic research are biological databases dedicated to cancer data and oncogenomic research. They can be a primary source of cancer data, offer a certain level of analysis or even offer online data mining.

List

The table below gives an overview of databases for that serve specifically for oncogenomic research. Note that this is not a comprehensive list and does not contain databases that have a generic focus. You may find databases containing cancer data among the List of biological databases or Microarray databases.

Database	Institute / Organization	Alteration Types	Primary Source	Processed Data	Organisms	Cell lines	Public Data	Restricted Data	-
The BioExpress® Oncology Suite from Ocimum Bio Solutions contains gene expression data from primary, metastatic, and benign tumor samples, and normal samples, including matched adjacent controls.	Ocimum Bio Solutions, United States	Gene Expression			Human, Rat and Mouse				-
ClinicalTrials.gov contains descriptions and some results from clinical trials, many of which are genomically targeted.	National Institutes of Health, United States	Various			Human				-
Project Data Sphere from The CEO Life Sciences Consortium allows researchers to share, integrate, and analyze de-identified patient-level, comparator arm, phase III cancer data.	The CEO Life Sciences Consortium, United States	Various			Human				-
Catalogue Of Somatic Mutations In Cancer (COSMIC)	Wellcome Trust Sanger Institute, UK	Mutation			Human				-
cBio Cancer Genomics Portal	Memorial Sloan-Kettering Cancer Center, United States	Copy number, Mutation, Methylation, Gene Expression, miRNA Expression, Protein, Phosphorylation			Human				-
International Cancer Genome Consortium	Worldwide	Mutation			Human				-
Integrative Oncogenomics Cancer Browser (IntOGen)	Universitat Pompeu Fabra, Spain	Copy number, Mutation, Gene Expression			Human				-
Mouse Retrovirus Tagged Cancer Gene Database	Institute of Molecular and Cell Biology, Singapore	Mutations			Mouse				-
Mouse Tumor Biology Database	The Jackson Laboratory, United States	Copy number, Mutation, Methylation, Gene Expression			Mouse				-
OncoDB.HCC	Academia Sinica, Taiwan	Copy number, Gene Expression, QTL			Human, Mouse, Rat				-
Genevestigator contains data from numerous public repositories including and renowned cancer research projects as TCGA.	Nebion AG, Switzerland	Gene Expression			Human, Mouse, Rat, Monkey, Dog and others				-
from Omicsoft Corporation contains data from large-scale Genomic projects, include TCGA, ICGC and others]	Omicsoft Corporation, United States	Copy number, Mutation, Methylation, Gene Expression, miRNA Expression, Protein, Phosphorylation			Human, Rat and Mouse				-
Oncomine	Compendia Bioscience, Inc., United States	Gene Expression			Human				-
Oncoreveal	Boğaziçi University, Turkey	Gene Expression			Human				-
Progenetix	Universität Zürich, Switzerland	Copy number			Human				-
The Cancer Genome Atlas	National Cancer Institute, United States	Copy number, Mutation, Methylation, Gene Expression, miRNA expression			Human				-
CancerResource	University Medicine Berlin, Germany								-
Roche Cancer Genome Database (RCGDB)	Roche Diagnostics, Penzberg, Germany								-
Network of Cancer Genes	King's College London, UK	Mutation			Human
	NCBI, NIH, USA	Mutation	No	Yes	Human	No	Yes	No