| Title | Director | Cast | Genre | Notes |
| Battle Royale | | Tatsuya Fujiwara | Thriller | |
| Brother | | Beat Takeshi, Omar Epps, Claude Maki | Crime | |
| Cardcaptor Sakura Movie 2: The Sealed Card | | | Animation | |
| Case Closed: Captured in Her Eyes | | | Animation | |
| Chaos | | Miki Nakatani, Masato Hagiwara, Ken Mitsuishi | Mystery-thriller | |
| Crayon Shin-chan: The Storm Called The Jungle | | | Animated | |
| Dead or Alive 2: Birds | | Show Aikawa, Riki Takeuchi | Crime | |
| Doki Doki Wildcat Engine | | | Animated | |
| Dora-Heita | | Kōji Yakusho, Yuko Asano, Bunta Sugawara | Comedy | |
| Doraemon: A Grandmother's Recollections | | | Animated | |
| Doraemon: Nobita and the Legend of the Sun King | | | Anime | |
| Escaflowne | | Maaya Yamaguchi, Tomokazu Seki | Anime | |
| Eureka | | Kōji Yakusho, Ken Mitsuishi, Yutaka Matsushige | Drama | |
| Godzilla vs. Megaguirus | | Misato Tanaka, Shosuke Tanihara, Masato Ibu | Science fiction, action | |
| Gojoe | | Tadanobu Asano, Masatoshi Nagase | Action | |
| GTO: The Movie | | | | |
| Isn't She Great | | Bette Midler, Nathan Lane, David Hyde Pierce | | American-British-German-Japanese co-production |
| Isola | | Yoshino Kimura, Yu Kurosawa, Ken Ishiguro | Horror | |
| Ju-on | | Yurei Yanagi, Chiaki Kuriyama, Takako Fuji | Horror | Direct-to-video release. |
| Ju-on 2 | | Yuuko Daike, Makoto Ashikawa, Kahori Fuji | Horror | Direct-to-video release |
| Juvenile | | | | |
| Keizoku-Unsolved Cases | | Kiyoshi Nakajo, Atsuro Watanabe, Nanako Okochi | | |
| GoGoV: Sudden Shock! A New Warrior! | | | | |
| GoGoV vs. Gingaman | | | | |
| Like a Flowing River | | Mitsuko Mori, Kunie Tanaka, Yoshiko Kuga | | |
| Mononoke hime in U.S.A. | | Hayao Miyazaki | Documentary | |
| Nagai Yume | Higuchinsky | Shuuji Kashiwabara, Masami Horiuchi, Eriko Hatsune | Horror | Television film |
| Off-Balance | | | | |
| One Piece: The Movie | | Mayumi Tanaka, Kazuya Nakai, Akemi Okamura, Kappei Yamaguchi | Animation | First One Piece movie. |
| Pikachu & Pichu | | | Animated | |
| Pokémon 3: The Movie | | | Anime | |
| Pyrokinesis | | Akiko Yada, Hideaki Itō, Ryuji Harada | Horror | |
| Ring 0: Birthday | | Yukie Nakama, Seiichi Tanabe, Yoshiko Tanaka | Horror | |
| Sad and Painful Search: Office Lady Essay | | Emi Kawana, Yumi Yoshiyuki | Pink | Best Film, Pink Grand Prix |
| Senrigan | | Miki Mizuno, Hitomi Kuroki, Toshirou Yanagiba | | |
| Sunday's Dream | | | | Screened at the 2000 Cannes Film Festival |
| Titan A.E. | Don Bluth, Gary Goldman | Matt Damon, Bill Pullman, John Leguizamo, Nathan Lane, Janeane Garofalo, Drew Barrymore | Animated science fiction action-adventure | |
| Tomie: Replay | | Mai Hosho, Sayaka Yamaguchi, Yosuke Kubozukai | Horror | |
| Uzumaki | Higuchinsky | Eriko Hatsune, Fhi Fan, Hinako Saeki | Horror | |
| Versus | | Tak Sakaguchi, Hideo Sakaki | Action, horror | |