List of bioinformatics software

The list of bioinformatics software tools can be split up according to the license used:

List of proprietary bioinformatics software
List of open-source bioinformatics software

Alternatively, here is a categorization according to the respective bioinformatics subfield specialized on:

Sequence analysis software
*List of sequence alignment software
*List of alignment visualization software
*Alignment-free sequence analysis
*De novo sequence assemblers
*List of gene prediction software
*List of disorder prediction software
*List of Protein subcellular localization prediction tools
*List of phylogenetics software
*List of phylogenetic tree visualization software
*:Category:Metagenomics_software
Structural biology software
*List of molecular graphics systems
*List of protein-ligand docking software
*List of RNA structure prediction software
*List of software for protein model error verification
*List of systems biology modeling software
*List of protein secondary structure prediction programs
*List of protein structure prediction software
*:Category:Molecular dynamics software
*Structural alignment software
Other
*Compression of genomic sequencing data
*Bioinformatics workflow management system
*List of biomedical cybernetics software
*List of genetic engineering software
*List of systems biology visualization software
*List of systems biology modelling software
*2D gel analysis software
*List of mass spectrometry software