List of protein secondary structure prediction programs


List of notable protein secondary structure prediction programs
NameMethod descriptionTypeLinkInitial release
RaptorX-SS8predict both 3-state and 8-state secondary structure using conditional neural fields from PSI-BLAST profilesWebserver/downloadable 2011
GORInformation theory/Bayesian inferenceMany implementations 2002
JpredMultiple Neural network assignment from PSI-BLAST and HMMER profiles. Predicts secondary structure and solvent accessibilityWebserver1998
PredictProteinProfile-based neural networkWebserver1992
PSIPREDtwo feed-forward neural networks which perform an analysis on output obtained from PSI-BLASTWebserver1999