Station/stop Name | Location | Code | Image | Line | Annual Ridership
| Station Owner | Amtrak Thruway / Rail connection | Notes |
| ' | Anaheim | ANA | | Pacific Surfliner | | City of Anaheim | Metrolink: | Replaced the nearby Anaheim–Stadium station in 2014 |
| ' | Antioch | ACA | | Gold Runner | | City of Antioch | | Planned to be replaced by Oakley station in Oakley |
| '^ | Auburn | ARN | | Capitol Corridor | | Union Pacific Railroad | Amtrak Thruway: 20 | |
| '^ | Bakersfield | BFD | | Gold Runner | | City of Bakersfield | Amtrak Thruway: 1, 10, 19 | |
| '^ | Barstow | BAR | | Southwest Chief | | BNSF Railway/ City of Barstow | Amtrak Thruway: 10 | Site of former Casa del Desierto, a former Harvey House listed on the NRHP. Serves the Western America Railroad Museum and Route 66 "Mother Road" Museum. |
| ' | Berkeley | BKY | | Capitol Corridor | | Union Pacific Railroad | | |
| '^ | Burbank | BUR | | Coast Starlight Pacific Surfliner | | Caltrans | | Serves Burbank Airport |
| ' | Burbank | BBK | | Pacific Surfliner | | City of Burbank | Metrolink: | Limited Amtrak service; former Southern Pacific station |
| ' | Camarillo | CML | | Pacific Surfliner | | Union Pacific Railroad/ City of Camarillo | Metrolink: | |
| '^ | Carpinteria | CPN | | Pacific Surfliner | | City of Carpenteria/ Union Pacific Railroad | Amtrak Thruway: 10 | |
| ' | Chatsworth
| CWT | | Pacific Surfliner | | Los Angeles Department of Transportation | Metrolink: | |
| '^ | Chico | CIC | | Coast Starlight | | City of Chico | Amtrak Thruway: 3 | |
| '^ | Colfax | COX | | California Zephyr | | | Amtrak Thruway: 20 | |
| ' | Colonel Allensworth State Historic Park | CNL | | Gold Runner | | | | Conditional request stop that requires preapproval and reservations several weeks in advance for groups of not less than 20 persons, accordingly this platform only station is not included on Amtrak's list of active stations. |
| ' | Corcoran | COC | | Gold Runner | | City of Corcoran | | Replica of former 1907-built AT&SF depot demolished in 1998. Rebuilt in 1999. |
| '^ | Davis | DAV | | California Zephyr Capitol Corridor Coast Starlight | | City of Davis | Amtrak Thruway: 3 | Former Southern Pacific station listed on the NRHP |
| ' | Dunsmuir | DUN | | Coast Starlight | | Union Pacific Railroad | | |
| '^ | Emeryville | EMY | | California Zephyr Capitol Corridor Coast Starlight Gold Runner | | City of Emeryville | Amtrak Thruway: 99 | |
| ' | Fairfield | FFV | | Capitol Corridor | | City of Fairfield | | |
| ' | Fremont | FMT | | Capitol Corridor | | City of Fremont | ACE | |
| '^ | Fresno | FNO | | Gold Runner | | City of Fresno | Amtrak Thruway: 15B | Former AT&SF station listed on the NRHP |
| '^ | Fullerton | FUL | | Pacific Surfliner Southwest Chief | | BNSF and City of Fullerton | | Former AT&SF and UP stations, both listed separately on the NRHP |
| '^ | Glendale | GDL | | Pacific Surfliner | | City of Glendale | | Former Southern Pacific station listed on the NRHP |
| ' | Goleta | GTA | | Pacific Surfliner | | | | |
| '^ | Grover Beach | GVB | | Pacific Surfliner | | Union Pacific Railroad | Amtrak Thruway: 17, 18, 21 | |
| ' | Guadalupe | GUA | | Pacific Surfliner | | Union Pacific Railroad | | |
| '^ | Hanford | HNF | | Gold Runner | | BNSF | Amtrak Thruway: 18 | One of the few remaining San Francisco and San Joaquin Valley Railway depots in existence. |
| ' | Hayward | HAY | | Capitol Corridor | | City of Hayward | | |
| ' | Irvine | IRV | | Pacific Surfliner | | City of Irvine | Metrolink: | |
| '^ | Lodi | LOD | | Gold Runner | | City of Lodi Union Pacific Railroad | Amtrak Thruway: 3 | |
| ' | Surf | LPC | | Pacific Surfliner | | Union Pacific Railroad | | Located in Surf, but also serves Lompoc. |
| '^ | Los Angeles | LAX | | Coast Starlight Southwest Chief Sunset Limited Texas Eagle Pacific Surfliner | | LACMTA | | Union Station listed on the NRHP |
| ' | Madera | MDR | | Gold Runner | | County of Madera | | Replaced Storey station in 2010. Planned to be replaced by a new Madera station further to the south. |
| '^ | Martinez | MTZ | | California Zephyr Capitol Corridor Coast Starlight Gold Runner | | City of Martinez | Amtrak Thruway: 7 | |
| '^ | Merced | MCD | | Gold Runner | | State of California | Amtrak Thruway: 15A | Planned to be replaced by a new Merced station about 7 blocks south. |
| ' | Modesto | MOD | | Gold Runner | | City of Modesto | | |
| ' | Moorpark | MPK | | Pacific Surfliner | | City of Moorpark | Metrolink: | |
| ' | Needles | NDL | | Southwest Chief | | BNSF Railway | | Site of former El Garces Hotel a former Harvey House listed on the NRHP |
| ' | Northridge
| NRG | | Pacific Surfliner | | Los Angeles Department of Transportation | Metrolink: | Limited Amtrak service; former Southern Pacific station |
| ' | Oakland | OAC | | Capitol Corridor | | Amtrak/BART | BART:,,, | Named Coliseum station by BART |
| '^ | Oakland | OKJ | | Capitol Corridor Coast Starlight Gold Runner | | Port of Oakland | Amtrak Thruway: 17 | Replaced Oakland 16th Street in 1995 |
| '^ | Oceanside | OSD | | Pacific Surfliner | | North County Transit District | | Replaced a former AT&SF depot in 1984 |
| ' | Ontario | ONA | | Sunset Limited Texas Eagle | | City of Ontario/Union Pacific Railroad | | |
| '^ | Oxnard | OXN | | Coast Starlight Pacific Surfliner | | City of Oxnard | | |
| ' | Palm Springs | PSN | | Sunset Limited Texas Eagle | | City of Palm Springs | | |
| '^ | Paso Robles | PRB | | Coast Starlight | | City of Paso Robles | Amtrak Thruway: 17, 18, 21 | |
| ' | Pomona | POS | | Sunset Limited Texas Eagle | | City of Pomona | Metrolink: | Named Pomona–Downtown station by Metrolink |
| '^ | Redding | RDD | | Coast Starlight | | Union Pacific Railroad | Amtrak Thruway: 3 | Uses former Southern Pacific depot |
| ' | Richmond | RIC | | California Zephyr Capitol Corridor Gold Runner | | BART | BART:, | 1973-built BART station; used by Amtrak since 1978. |
| '^ | Riverside | RIV | | Southwest Chief | | RCTA BNSF Railway | | Named Riverside-Downtown station by Metrolink |
| '^ | Rocklin | RLN | | Capitol Corridor | | Union Pacific Railroad/ City of Rocklin | Amtrak Thruway: 20 | |
| '^ | Roseville | RSV | | California Zephyr Capitol Corridor | | City of Roseville Union Pacific Railroad | Amtrak Thruway: 20 | |
| '^ | Sacramento | SAC | | California Zephyr Capitol Corridor Coast Starlight Gold Runner | | City of Sacramento | | Former Southern Pacific station listed on the NRHP. Officially named Sacramento Valley Station. |
| '^ | Salinas | SNS | | Coast Starlight | | City of Salinas Redevelopment Agency | Amtrak Thruway: 17, 21 | |
| '^ | San Bernardino | SNB | | Southwest Chief | | San Bernardino Associated Governments | | Former AT&SF station and Harvey House listed on NRHP |
| ' | San Clemente | SNP | | Pacific Surfliner | | City of San Clemente/ OCTA | Metrolink: | Named San Clemente Pier station by Metrolink to distinguish from their own San Clemente station. Limited Amtrak service, and weekend-only Metrolink service. |
| ' | San Diego | OLT | | Pacific Surfliner | | NCTD | | Named Old Town station by San Diego Trolley. |
| '^ | San Diego | SAN | | Pacific Surfliner | | Catellus Development Corporation | | Former AT&SF station listed on the NRHP |
| '^ | San Jose | SJC | | Coast Starlight Capitol Corridor | | PCJPB | | Former Southern Pacific station listed on the NRHP. Commonly known as Diridon station. |
| ' | San Juan Capistrano | SNC | | Pacific Surfliner | | City of San Juan Capistrano and OCTA | Metrolink: | Former AT&SF station built in 1894 |
| '^ | San Luis Obispo | SLO | | Coast Starlight Pacific Surfliner | | Union Pacific Railroad | Amtrak Thruway: 17, 18, 21 | |
| ' | Santa Ana | SNA | | Pacific Surfliner | | OCTA | Metrolink: | |
| '^ | Santa Barbara | SBA | | Coast Starlight Pacific Surfliner | | Redevelopment Agency of the City of Santa Barbara | Amtrak Thruway: 10, 17, 21 | Former Southern Pacific station listed on the NRHP |
| ' | Santa Clara | GAC | | Capitol Corridor | | City of Santa Clara, Union Pacific Railroad | ACE | - |
| ' | Santa Clara | SCC | | Capitol Corridor | | PCJPB, South Bay Historical Railroad Society | | Former San Francisco and San Jose Railroad depot listed on NRHP |
| ' | Simi Valley | SIM | | Coast Starlight Pacific Surfliner | | City of Simi Valley | Metrolink: | |
| ' | Solana Beach | SOL | | Pacific Surfliner | | Amtrak | Coaster | |
| '^ | Stockton | SKT | | Gold Runner | | City of Stockton | | Former Southern Pacific station |
| '^ | Stockton | SKN | | Gold Runner | | BNSF Railway | Amtrak Thruway: 3, 6 | Former AT&SF station |
| ' | Suisun | SUI | | Capitol Corridor | | City of Suisun/ Union Pacific Railroad | Former Southern Pacific station | |
| '^ | Truckee | TRU | | California Zephyr | | Town of Truckee/ Union Pacific Railroad | Amtrak Thruway: 20A | Former Southern Pacific station |
| ' | Denair | TRK | | Gold Runner | | BNSF Railway | | Open shelters. Located in Denair, but also serves Turlock. |
| '^ | Van Nuys
| VNC | | Coast Starlight Pacific Surfliner | | State of California | | |
| '^ | Ventura | VEC | | Pacific Surfliner | | City of Ventura | Amtrak Thruway: 10 | |
| ' | Victorville | VCV | | Southwest Chief | | BNSF Railway, Victorville Redevelopment Agency | | |
| ' | Wasco | WAC | | Gold Runner | | City of Wasco | | |