| Name | Type | Specification | Use | Equipment |
| | R21-TECH-13-00, " 3.0 Specification" | | AIM, SafeXcel-3340, PSIAM |
| AES | Block cipher | FIPS 197 | Numerous | Numerous |
| BATON | Block cipher | | Various | PKCS#11, CDSA/CSSM, AIM, CYPRIS, APCO Project 25, MYK-85, Fortezza Plus, SecNet-11, Sierra, SafeXcel-3340, PSIAM |
| BAYLESS | | | | CYPRIS |
| BYTEMAN | | | | CYPRIS |
| CARDIGAN | | | | CYPRIS |
| CARDHOLDER | | | Satellite uplink command encryption | CYPRIS, KI-17, U-AYJ Flight Decrypt Chip, Flight Encrypt Chip, MYK-16, CXS-810, CXS-2000, MCU-100, MCU-600 |
| CARIBOU | | | Satellite uplink command encryption | U-TXZ, MYK-15A |
| CRAYON | | | | AIM, CYPRIS |
| FASTHASH | Cryptographic hash function | | MISSI Type 1 hash | PKCS #11, CDSA/CSSM |
| FIREFLY / Enhanced FIREFLY | | | EKMS public-key cooperative key generation | AIM, SafeXcel-3340, SecNet54, ViaSat KG-25x, PSIAM |
| GOODSPEED | | | | Sierra II |
| HAVE QUICK | | | Antijam, LPI/LPD airborne voice communication | CYPRIS |
| JACKNIFE | | | | AIM for IFF Mode 5 |
| JOSEKI | | R21-TECH-0062-92, "JOSEKI-1, A Bootstrap Procedures" | Protection of secret algorithms in firmware | AIM, PSIAM |
| JUNIPER | Block cipher | | | PKCS #11, CDSA/CSSM |
| KEESEE | | | | AIM, CYPRIS, PSIAM |
| Mark XII IFF | | | IFF secondary radar | AIM |
| MAYFLY | Asymmetric-key algorithm | | | PKCS #11, CDSA/CSSM |
| MEDLEY | | R21-TECH-30-01, "MEDLEY Implementation Standard" | | AIM, SecNet 54, SafeXcel-3340, ViaSat KG25x, PSIAM |
| PEGASUS | | | Satellite telemetry and mission data downlinks | KG-227, KG-228, KI-17, U-BLW Pegasus Space Microcircuit Chip, U-BLX Pegasus Ground Microcircuit Chip, MYK-17, CXS-810, CXS-2000, MCU-100, MCU-600 |
| PHALANX | | | | AIM, CYPRIS |
| SAVILLE | | | Low-bandwidth voice encryption | AIM, CYPRIS, Windster, VINSON |
| VALLOR | | | TTY broadcasts to submarines | AIM |
| WALBURN | | | High-bandwidth link encryption | AIM, KG-81/94/194/95 |
| PADSTONE | | | | CYPRIS, Windster, Indictor |
| WEASEL | | | | SafeXcel-3340 |
| Name | Type | Specification | Use | Equipment |
| CORDOBA | | | | CYPRIS, Windster, Indictor |
| KEA | Asymmetric-key algorithm | R21-Tech-23-94, "Key Exchange Algorithm " | Key exchange and digital signature algorithm for Fortezza, etc. | Fortezza, Fortezza Plus, Palladium Secure Modem |
| SKIPJACK | Block cipher | R21-Tech-044-91, "SKIPJACK" | Confidentiality algorithm for Fortezza, etc. | Fortezza, Fortezza Plus, Palladium Secure Modem |