| Name | Images | Location | Year | Remarks |
| Great Mosque of Demak | | Demak, Central Java | 1466–1474 | One of the oldest surviving mosques in Indonesia. Renovated in 1506. |
| Istiqlal Mosque | | Central Jakarta | 1978 | |
| Al-Azhar Great Mosque | | Kebayoran Baru, South Jakarta | 1958 | |
| Asasi Mosque | | Padang Panjang, West Sumatra | 1770 | |
| Azizi Mosque | | Langkat Regency, North Sumatra | 1902 | |
| Great Mosque of Banten | | Serang, Banten | 1552 | |
| Kasunyatan Mosque | | Kasunyatan, Serang | 1570–1596 | |
| Kali Pasir Mosque | | Tangerang, Banten | 1700 | |
| Ats-Tsauroh Great Mosque of Serang | | Serang | 1870 | |
| Al-Azhom Grand Mosque | | Tangerang City | 2003 | |
| Al-Bantani Grand Mosque | | Serang | 2010 | |
| Kapal Bosok Mosque | | Serang | 2014 | |
| Al-Anshor Mosque | | West Jakarta | 1648 | Constructed by Muslim traders from Bengal and Gujarat. |
| Al-Mansur Mosque | | West Jakarta | 1717 | |
| Luar Batang Mosque | | North Jakarta | 1736 | |
| Jami Kampung Baru Inpak Mosque | | West Jakarta | 1748 | |
| An-Nawier Mosque | | West Jakarta | 1760 | |
| Angke Mosque | | West Jakarta | 1761 | |
| Al-Mukarromah Jami Mosque | | North Jakarta | 1879 | Contains tombs of venerated ulama from Batavia. |
| Cut Meutia Mosque | | Central Jakarta | 1922 | |
| Al-Makmur Mosque | | Cikini, Menteng, Central Jakarta | 1932 | |
| Great Mosque of Sunda Kelapa | | Menteng, Central Jakarta | 1970 | |
| Jakarta Islamic Center | | North Jakarta | 1972 | |
| At-Tin Mosque | | East Jakarta | 1997 | |
| Ramlie Musofa Mosque | | North Jakarta | 2016 | |
| KH Hasyim Asy'ari Grand Mosque | | West Jakarta | 2017 | |
| Red Mosque of Panjunan | | Cirebon, West Java | 1480 | |
| Great Mosque of Cirebon | | Cirebon | 1489–1498 | Also known as Sang Ciptarasa Great Mosque. Part of the Kraton Kasepuhan. |
| Great Mosque of Sumedang | | Sumedang, West Java | | |
| Great Mosque of Cianjur | | Cianjur, West Java | 1810 | |
| Grand Mosque of Bandung | | Bandung, West Java | 1812 | Renovated in 1955, 1971, and 2001. |
| Great Mosque of Garut | | Garut, West Java | 1813 | Renovated in 1949, 1979, and 1998. |
| Manonjaya Great Mosque | | Manonjaya, Tasikmalaya, West Java | 1834 | |
| Great Mosque of Tasikmalaya | | Tasikmalaya, West Java | 1888 | |
| Great Mosque of Sukabumi | | Sukabumi, West Java | | |
| At-Taqwa Mosque, Cirebon | | Cirebon | 1951 | |
| Salman Mosque ITB | | Bandung | 1972 | Mosque of the Bandung Institute of Technology. |
| Bogor Grand Mosque | | Bogor, West Java | 1979 | |
| Al-Furqon Mosque UPI | | Bandung | 1980 | Mosque of the Indonesia University of Education. |
| Ukhuwah Islamiyah Mosque UI | | Depok, West Java | 1987 | Mosque of the University of Indonesia Depok campus. |
| Al-Ukhuwah Mosque | | Bandung | 1998 | |
| Dian Al-Mahri Mosque | | Depok | 2006 | |
| Al-Irsyad Mosque | | Bandung, West Java | 2010 | |
| Trans Studio Great Mosque | | Bandung | 2015 | |
| Rahmatan Lil-Alamin Mosque | | Indramayu, West Java | 2002 | Part of the Ma'had Al-Zaytun pesantren. |
| Al-Jabbar Grand Mosque | | Bandung | 2022 | |
| Saka Tunggal Mosque | | Purwokerto, Central Java | 1871 | Listed among the oldest built mosques by some sources, with the establishment date of 1288. However, the Central Java Province Public Relations Bureau claims the establishment date as 1288 on the Hijri calendar, which is equivalent to the year 1871 on the gregorian calendar. |
| Kudus Mosque">Kudus, Indonesia">Kudus Mosque | | Kudus, Central Java | 1549 | The year refers to the establishment of the mosque. The current mosque was built in the 20th century. |
| Mantingan Mosque | | Mantingan, Jepara, Central Java | 1559 | |
| Great Mosque of Kauman Magelang | | Magelang, Central Java | 1670 | |
| An-Nuur Great Mosque of Central Java | | Mungkid, Central Java | 2024 | |
| Great Mosque of Jepara | | Jepara | | |
| Kauman Mosque of Semarang | | Semarang, Central Java | 1749 | |
| Grand Mosque of Banyumas">Sheikh Zayed Grand Mosque">Grand Mosque of Banyumas | | Banyumas, Central Java | 1755 | |
| Thousand Crescent Mosque | | Purwokerto | | Under construction |
| Great Mosque of Surakarta | | Surakarta, Central Java | 1763–1768 | The royal mosque of Surakarta Sunanate. |
| Baitunnur Great Mosque of Pati | | Pati, Central Java | 1854 | Renovated in 1979–1980. |
| Al-Wustho Mangkunegaran Mosque | | Surakarta, Central Java | 1918 | |
| Great Mosque of Purbalingga | | Purbalingga, Central Java | 2004 | |
| Layur Mosque | | Semarang, Central Java | 1802 | |
| Great Mosque of Central Java | | Semarang | 2006 | |
| Al-Ittihad Mosque Jatibarang | | Jatibarang, Central Java | 2008 | |
| Sheikh Zayed Grand Mosque | | Surakarta | 2022 | A smaller replica of the Grand Mosque in Abu Dhabi, the U.A.E. |
| Grand Mosque of Mataram | | Yogyakarta | 1640 | Also known as the Great Mosque of Kotagede. |
| Kauman Mosque of Pleret | | Bantul, Special Region of Yogyakarta | 1649 | Archaeological site of the mosque ruins. |
| Kauman Great Mosque | | Yogyakarta | 1773 | |
| Syuhada Mosque | | Yogyakarta | 1952 | |
| Jogokariyan Mosque | | Yogyakarta | 1966 | |
| Soko Tunggal Mosque | | Yogyakarta | 1972 | |
| UGM Campus Mosque | | Sleman, Special Region of Yogyakarta | 1999 | Mosque of the Gadjah Mada University. |
| Bantul Mosque">Bantul Regency">Bantul Mosque | | Bantul | 1987 | |
| Ampel Mosque | | Surabaya, East Java | 1421 | Oldest mosque in Surabaya. The original column was built in 1421. The mosque has been restored several times since then. |
| Sunan Giri Mosque | | Gresik, East Java | 1544 | |
| Baiturrahman Great Mosque of Banyuwangi | | Banyuwangi, East Java | 1773 | |
| Great Mosque of Sumenep | | Sumenep, East Java | 1787 | A mosque that exemplifies Portuguese characteristics, not different from mosques in Sri Lanka. |
| Baitul Hakim Mosque of Madiun | | Madiun, East Java | 1800 | |
| Great Mosque of Malang | | Malang, East Java | 1890 | The serambi of the building was heavily altered, concealing the original architecture of the mosque just behind it. |
| Great Mosque of Tuban | | Tuban, East Java | 1928 | |
| Tiban Mosque | | Turen, Malang | 1976 | Part of Pondok Pesantren Salafiyah Bihaaru Bahri 'Asali Fadlaailir Rahmah. |
| Al-Akbar Mosque | | Surabaya, East Java | 2000 | |
| Cheng Ho Mosque of Surabaya | | Surabaya | 2002 | |
| Muhammad Cheng Hoo Mosque | | Pasuruan, East Java | 2008 | |
| Indrapuri Old Mosque | | Indrapuri, [Aceh Besar|Indrapuri], Aceh | 1607–1636 | The mosque was built on top of a 12th-century Hindu temple. Renovation occurred in 1696 and later in 1879. |
| Baiturrahman Grand Mosque | | Banda Aceh | 1881 | One of the oldest mosques in Aceh, the building survived the 2004 [Indian Ocean earthquake and tsunami|2004 tsunami]. |
| Great Mosque of Singkil | | Aceh Singkil | 1909 | Renovated close to the original architecture in 2005 after destruction by the 2004 tsunami. |
| Baiturrahim Mosque | | Banda Aceh | 1922 | |
| Baitul Makmur Meulaboh Grand Mosque | | West Aceh | 1999 | |
| Al-Osmani Mosque | | Medan, North Sumatra | 1872 | First wooden construction in 1854, alteration began in 1870. |
| Grand Mosque of Medan | | Medan | 1906 | |
| Jami Mosque of Air Tiris | | Kampar Regency, Riau | 1904 | |
| An-Nur Great Mosque Pekanbaru | | Pekanbaru, Riau | 1968 | |
| Al-Manan Mosque | | Dumai, Riau | 2002 | |
| Grand Mosque of the Sultan of Riau | | Penyengat Island, West Sumatra | 1567–1599 | |
| Syekh Burhanuddin Grand Mosque | | Padang [Pariaman Regency], West Sumatra | 1670 | |
| 60 Kurang Aso Mosque | | South Solok Regency, West Sumatra | | |
| Lima Kaum Mosque | | Tanah Datar Regency, West Sumatra | 1710 | |
| Lubuak Bareh Mosque | | Padang Pariaman Regency, West Sumatra | 1727 | |
| Bawan Tua Mosque | | Agam Regency, West Sumatra | 1800 | |
| Grand Mosque of Ganting | | Padang, West Sumatra | 1805 | Oldest mosque in Padang and one of the largest in the city. |
| Grand Mosque of Kubang Putih | | Agam Regency, West Sumatra | 1810 | |
| Nurul Hikmah Sipisang Mosque | | Agam Regency, West Sumatra | 1818 | |
| Bingkudu Mosque | | Agam Regency | 1823 | |
| Ampang Gadang Old Mosque | | Lima Puluh Kota Regency, West Sumatra | 1837 | |
| Tuo Koto Nan Ampek Mosque | | Payakumbuh, West Sumatra | 1840 | |
| Muhammadan Mosque | | Padang, West Sumatra | 1860 | |
| Teluk Bayur Grand Mosque | | Padang, West Sumatra | 1888 | |
| Nurul Islam Great Mosque | | Sawahlunto
, West Sumatra | 1894 | Initially built as a power station. Turned into a mosque in 1952. |
| Lubuk Bauk Mosque | | Padang Panjang, West Sumatra | 1896 | |
| Badano Grand Mosque | | Pariaman, West Sumatra | | |
| Saadah Mosque | | Tanah Datar Regency, West Sumatra | 1910 | |
| Grand Mosque of Balai Gadang Mungo | | Limapuluh Koto Regency, West Sumatra | 1914 | |
| Baiturrahman Mosque of Sungayang | | Tanah Datar Regency | 1916 | |
| Jami Mosque of Sungai Jambu | | Tanah Datar Regency | 1918 | |
| Rao Rao Mosque | | Tanah Datar Regency | 1918 | |
| Nurul Huda Mosque | | Sawahlunto, West Sumatra | 1921 | |
| Al-Imam Koto Baru Mosque | | Pesisir Selatan Regency, West Sumatra | 1924 | |
| Mutaqaddimin Mosque | | Limapuluh Koto Regency, West Sumatra | 1930 | |
| Nurul Iman Mosque of Koto Gadang | | Agam Regency, West Sumatra | 1932 | |
| Grand Mosque of Nanggalo | | Padang, West Sumatra | 1933 | |
| Koto Baru Grand Mosque | | South Solok Regency, West Sumatra | 1933 | |
| Syekh Sampu Mosque | | Solok Selatan Regency, West Sumatra | 1936 | |
| Nurul Amin Mosque of Pagaruyung | | Tanah Datar Regency | 1992 | |
| Bayur Grand Mosque | | Agam Regency | 1999 | |
| Surau Baitul Jalil | | Bukittinggi, West Sumatra | 2004 | |
| Nurul Iman Mosque | | Padang | 2007 | |
| Grand Mosque of Andalas | | Padang | 2012 | |
| Al-Karim Grand Mosque | | Agam Regency, West Sumatra | 2012 | |
| Grand Mosque of West Sumatra | | Padang | 2014 | |
| Great Mosque of Pondok Tinggi | | Sungai Penuh, Jambi | 1874 | |
| Ikhsaniyyah Mosque | | Jambi City | 1880 | |
| Akbar At-Taqwa Grand Mosque | | Bengkulu City | 1989 | |
| Grand Mosque of Tua Tunu | | Pangkalpinang, Bangka Belitung | 2006 | |
| Great Mosque of Palembang | | Palembang, South Sumatra | 1893 | Established in 1748; major renovations in 1893, 1916, the 1950s, and the 1970s; major expansion in the 1990s. The royal mosque of Palembang Sultanate. |
| Cheng Ho Mosque | | Palembang | 2006 | |
| Al-Furqon Grand Mosque of Bandar Lampung | | Bandar Lampung | 1961 | |
| Al-Bakrie Grand Mosque | | Bandar Lampung | 2025 | |
| Baitul Mukhlisin Islamic Center Mosque | | West [Lampung Regency] | 2010 | |
| Floating Mosque of Al-Aminah | | Pesawaran Regency, Lampung | 2012 | |
| Jami Mosque of Sintang | | Sintang Regency, West Kalimantan | 1672 | |
| Jami Mosque of Sambas | | Sambas, West Kalimantan | 1702 | |
| Jami Mosque of Pontianak | | Pontianak, West Kalimantan | 1821 | Construction started in 1821. The first mosque of West Kalimantan and the largest in the province. |
| Jami Mosque of Landak | | Landak Regency, West Kalimantan | 1895 | |
| Nurul Huda Mosque of Sungai Jawi | | Ketapang Regency, West Kalimantan | 1932 | |
| Babul Chair Mosque | | Ketapang Regency | 1953 | |
| Kyai Gede Mosque | | West Kotawaringin Regency, Central Kalimantan | 1675 | |
| Shiratal Mustaqiem Mosque | | Samarinda, East Kalimantan | 1881 | |
| Imanuddin Grand Mosque | | Berau Regency, East Kalimantan | | |
| Aji Amir Hasanuddin Jami Mosque | | Tenggarong, East Kalimantan | 1930 | |
| Darussalam Grand Mosque | | Samarinda | 1967 | |
| Baitul Muttaqien Mosque | | Samarinda | 2008 | |
| Madinatul Iman Mosque | | Balikpapan, East Kalimantan | 2017 | |
| National Mosque of Nusantara | | Nusantara | | Under construction |
| Sultan Suriansyah Mosque | | Banjarmasin, South Kalimantan | 1526 | Established in the 16th century, it is the oldest mosque in Borneo based on its year of establishment. The form of the building has been altered in the 18th century. |
| Heritage Mosque of Banua Lawas | | Banua Lawas, South Kalimantan | 1625 | |
| Jami Mosque of Banjarmasin | | Banjarmasin, South Kalimantan | 1777 | |
| Jami Syekh Abdul Hamid Abulung Mosque | | Sungai Batang, Banjar, South Kalimantan | | |
| Jami Mosque of Sungai Banar | | Amuntai, Hulu Sungai Utara Regency, South Kalimantan | 1804 | |
| Holy Mosque of Banua Halat | | Tapin Regency, South Kalimantan | 1840 | |
| Great Mosque of Al-Karomah | | Martapura, South Kalimantan | 1863 | |
| Ba'angkat Mosque | | South Hulu Sungai Regency, South Kalimantan | 1908 | |
| Kanas Mosque | | Alalak, Banjarmasin, South Kalimantan | 1938 | |
| Kelayan Muhammadiyah Mosque | | Banjarmasin | 1938 | |
| Great Mosque of Riyadusshalihin | | Hulu Sungai Tengah Regency, South Kalimantan | 1962 | |
| Grand Mosque of Sabilal Muhtadin | | Banjarmasin, South Kalimantan | 1974 | |
| Syuhada Great Mosque | | Mamuju, West Sulawesi | 2011 | |
| Darussalam Great Mosque | | Palu, Central Sulawesi | 1978 | |
| Floating Mosque of Palu | | Palu, Central Sulawesi | 2011 | Hit by the 2018 Sulawesi earthquake and tsunami. |
| Katangka Mosque | | Gowa, South Sulawesi | 1603 | |
| Palopo Old Mosque | | Palopo, South Sulawesi | 1604 | |
| Nurul Hilal Dato Tiro Mosque | | Bulukumba, South Sulawesi | 1605 | |
| Nur Mosque of Balangnipa | | Sinjai Regency, South Sulawesi | 1660 | |
| Grand Mosque of Makassar | | Makassar, South Sulawesi | 1949 | |
| Al-Markaz Al-Islami Mosque | | Makassar, South Sulawesi | 1996 | |
| Amirul Mukminin Mosque | | Makassar, South Sulawesi | 2012 | |
| 99 Domes Mosque | | Makassar, South Sulawesi | 2023 | |
| Great Mosque of Wolio | | Baubau, Southeast Sulawesi | 1712 | |
| Al-Alam Mosque | | Kendari, Southeast Sulawesi | 2018 | |
| Nurul Huda Mosque of Gelgel | | Klungkung, Bali | | Renovated |
| Holy [Old Mosque of Singaraja] | | Singaraja, Bali | 1654 | Renovated |
| Baiturrahim Jami Mosques of Bungaya Kangin | | Bungaya Kangin, Bebandem, Karangasem Regency, Bali | 1768 | Renovated |
| Great Mosque of Jami Singaraja | | Singaraja, Bali | 1830 | Complited in 1860, renovated |
| Sudirman Grand Mosque | | Denpasar, Bali | 1974 | |
| Bayan Beleq Mosque | | Bayan, North Lombok|Bayan], West Nusa Tenggara | 1634 | |
| Nurul Huda Great Mosque of Sumbawa | | Sumbawa Regency, West Nusa Tenggara | 1648 | Renovated |
| Darussalam Great Mosque | | Taliwang, West Sumbawa, West Nusa Tenggara | 2010 | |
| Wapauwe Old Mosque | | Central Maluku | 1414 | Myth surrounds the year of establishment. The original structure and material has been replaced several times to maintain the mosque, but the architecture is kept similar. |
| Sultan of [Ternate Mosque] | | Ternate, North Maluku | 1606 | The construction of the mosque was initiated by the Sultanate of Ternate. |
| Patimburak Old Mosque | | Fakfak, Papua (province)|West Papua] | 1870 | |
| Al-Aqsha Mosque of Merauke | | Merauke, South Papua | 1980 | |
| Nurul Amin Mosque | | Jayapura, Papua | 1997 | |