List of sequenced plant genomes

This list of sequenced plant genomes contains plant species known to have publicly available complete genome sequences that have been assembled, annotated and published. Unassembled genomes are not included, nor are organelle only sequences. For all kingdoms, see the list of sequenced genomes. For mitochondrial genomes, see list of sequenced plant mitochondrial genomes, For plastid genomes, see list of sequenced plastomes.
See also List of sequenced algae genomes.

[Vascular plants]

[Fern]s

Organism strain	Division	Relevance	Genome size	Number of genes predicted	Organization	Year of completion	Assembly status
Azolla filiculoides	Polypodiophyta	Fern	0.75 Gb	20,201		2018
Salvinia cucullata	Polypodiophyta	Fern	0.26 Gb	19,914		2018
Ceratopteris richardii	Polypodiophyta	Model organism	7.5 Gb	36,857		2019, 2021	Partial assembly consisting of 7.5 Gb/11.2 Gb, arranged in 39 chromosomes
Alsophila spinulosa	Polypodiophyta	Tree Fern	6.23 Gb	67,831		2022

[Angiosperms]

[Eudicots]

[Proteales]

[Ranunculales]

[Trochodendrales]

[Caryophyllales]

Organism strain	Family	Relevance	Genome size	Number of genes predicted	Organization	Year of completion	Assembly status
Beta vulgaris subsp. vulgaris 'EL10'	Amaranthaceae	Crop plant	568.8 Mb	30,391		2013	2022 reference genome - scaffold N50 of 62 Mb
Chenopodium quinoa 'QQ74'	Amaranthaceae	Crop plant	1300 Mb	58,882		2017	3,486 scaffolds, scaffold N50 of 3.84 Mb, 90% of the assembled genome is contained in 439 scaffolds
Amaranthus hypocondriacus	Amaranthaceae	Crop plant	403.9 Mb	23,847		2016	16 large scaffolds from 16.9 to 38.1 Mb. N50 and L50 of the assembly was 24.4 Mb and 7, respectively.
Carnegiea gigantea	Cactaceae	Wild cactus	1100 Mb	34,209		2017	SGP5-SGP5p scaffold N50 of 0.468 Mb
Nepenthes mirabilis	Nepenthes	Carnivorous pitcher plant	691.4 Mb	42,961		2023	High-quality long-read assembly using PacBio CCS and RNA-seq data. 159,555 contigs/scaffolds and N50 of 10,307 bp
Suaeda aralocaspica	Amaranthaceae	Performs complete C₄ photosynthesis within individual cells	451.7 Mb	29,604	ABLife Inc.	2019	Scaffold N50 of 1.7 Mb
Simmondsia chinensis	Simmondsiaceae	Oilseed crop	831.5 Mb	23,490		2020	Scaffold N50 of 35.8 Mb
Drosera capensis	Droseraceae	Carnivorous sundew	263.79 Mb			2016	Scaffold N50 of 0.083 Mb
Tamarix chinensis	Tamaricaceae	Margin tree	1320 Mb			2023	Scaffold N50 of 110 Mb
Cistanthe cachinalensis	Montiaceae	Herbaceous plant				2025

[Rosids]

Organism strain	Family	Relevance	Genome size	Number of genes predicted	No of chromosomes	Organization	Year of completion	Assembly status
Bretschneidera sinensis	Akaniaceae	endangered relic tree species	1213.76 Mb	45,839	9		2022	Scaffold N50 of 146.5 Mb
Sclerocarya birrea	Anacardiaceae	Used for food		18,397			2018
Begonia masoniana	Begoniaceae	Flower	799.83 Mb	22,861	30		2022	contig N50: 0.44 Mb
Begonia darthvaderiana	Begoniaceae	Ornamental plant	724 Mb	23,444	30		2022	contig N50: 0.32 Mb
Begonia loranthoides	Begoniaceae	Ornnamental plant	797 Mb	22,059	38		2022	scaffold N50: 6.73 Mb
Begonia peltatifolia	Begoniaceae	Flower	331.75 Mb	23,010	30		2022	scaffold N50: 3.20 Mb
Betula pendula	Betulaceae	Boreal forest tree, model for forest biotechnology	435 Mbp	28,399	14	University of Helsinki	2017	454/Illumina/PacBio. Assembly size 435 Mbp. Contig N50: 48,209 bp, scaffold N50: 239,796 bp. 89% of the assembly mapped to 14 pseudomolecules. Additionally 150 birch individuals sequenced.
Betula platyphylla	Betulaceae	Pioneer hardwood tree species	430 Mbp				2021	contig N50 = 751 kbp
Betula nana	Betulaceae	Arctic shrub	450 Mbp				2013
Corylus heterophylla Fisch	Betulaceae	Nut tree used for food	370.75 Mbp	27,591	11		2021	Nanopore/Hi-C chromosome scale. Contig N50 and scaffold N50 sizes of 2.07 and 31.33 Mb, respectively
Corylus mandshurica	Betulaceae	Hazel used for breeding	367.67 Mb	28,409	11		2021
Aethionema arabicum	Brassicaceae	Comparative analysis of crucifer genomes					2013
Arabidopsis lyrata ssp. lyrata strain MN47	Brassicaceae	Model plant	206.7 Mbp	32,670	8		2011	8.3X sequence coverage, analyzed on ABI 3730XL capillary sequencers
Arabidopsis thaliana Ecotype:Columbia	Brassicaceae	Model plant	135 Mbp	27,655	5	AGI	2000
Barbarea vulgaris G-type	Brassicaceae	Model plant for specialised metabolites and plant defenses	167.7 Mbp	25,350	8		2017	66.5 X coverage with Illumina GA II technology
Brassica rapa ssp. pekinensis accession Chiifu-401-42	Brassicaceae	Assorted crops and model organism	485 Mbp	41,174	10	The Brassica rapa Genome Sequencing Project Consortium	2011	72X coverage of paired short read sequences generated by Illumina GA II technology
Brassica napus European winter oilseed cultivar 'Darmor-bzh'	Brassicaceae	Crops	1130 Mbp	101,040	19	Institutional Collaboration	2014	454 GS-FLX+ Titanium and Sanger sequencing. Correction and gap filling used 79 Gb of Illumina HiSeq sequence.
Capsella rubella	Brassicaceae	Close relative of Arabidopsis thaliana	130 Mbp	26,521		JGI	2013? 2013
Cardamine hirsuta strain 'Oxford'	Brassicaceae	A model system for studies in evolution of plant development	198 Mbp	29,458	8	Max Planck Institute for Plant Breeding Research, Köln, Germany	2016	Shotgun sequencing strategy, combining paired end reads and mate pair reads from Illumina HiSeq.
Eruca sativa	Brassicaceae	Used for food	851 Mbp	45,438		University of Reading	2020	Illumina MiSeq and HiSeq2500. PCR free paired end and long mate pair sequencing and assembly. Illumina HiSeq transcriptome sequencing.
Erysimum cheiranthoides strain 'Elbtalaue'	Brassicaceae	Model plant for studying defensive chemistry, including cardiac glycosides	175 Mbp	29,947	8	Boyce Thompson Institute, Ithaca, NY	2020	39.5 Gb PacBio sequences, one lane Illumina MiSeq sequencing, Phase Genomics Hi-C scaffolding, PacBio and Illumina transcriptome sequencing
Eutrema salsugineum	Brassicaceae	A relative of arabidopsis with high salt tolerance	240 Mbp	26,351		JGI	2013
Eutrema parvulum	Brassicaceae	Comparative analysis of crucifer genomes					2013
Leavenworthia alabamica	Brassicaceae	Comparative analysis of crucifer genomes					2013
Sisymbrium irio	Brassicaceae	Comparative analysis of crucifer genomes					2013
Thellungiella parvula	Brassicaceae	A relative of arabidopsis with high salt tolerance					2011
Cannabis sativa	Cannabaceae	Hemp and marijuana production	770.3 Mb	35,194			2023	Scaffold N50 of 77 Mb
Humulus lupulus	Cannabaceae	Beer ingredient	2488.1 Mb	57,465			2024	Scaffold N50 of 251.5 Mb
Capparis spinosa var. herbacea	Capparaceae	Crop	274.53 Mb	21,577			2022	contig N50 9.36 Mb
Carica papaya	Caricaceae	Fruit crop	369.8 Mb	20,332			2008	contig N50 11kbp scaffold N50 1Mbp total coverage ~3x 92.1% unigenes mapped 235Mbp anchored
Casuarina equisetifolia	Casuarinaceae	bonsai subject	300 Mb	29,827			2018
Tripterygium wilfordii	Celastraceae	Chinese medicine crop	340.12 Mbp	31,593			2021	Contig N50 3.09 Mbp
Cleome gynandra	Cleomaceae	C4 leafy vegetable and medicinal plant	740 Mb	30,933			2023	N50 of 42 Mb
Kalanchoë fedtschenkoi	Crassulaceae	Model for obligate CAM species in the eudicots	256.4 Mb	30,964	34		2017	Scaffold N50 of 2.5 Mb
Rhodiola crenulata	Crassulaceae	Uses for medicine and food	344.5 Mb	35,517			2017
Citrullus lanatus	Cucurbitaceae	Commercial fruit	373.7 Mb	23,440		BGI	2012	Scaffold N50 of 36.1 Mb
Cucumis melo	Cucurbitaceae	Commercial fruit	438.3 Mb	28,628			2012	Scaffold N50 of 30.5 Mb
Cucumis sativus 'Chinese long' inbred line 9930	Cucurbitaceae	Vegetable crop	224.8 Mb	23,999			2009	Scaffold N50 of 31.1 Mb
Cucurbita argyrosperma subsp. argyrosperma	Cucurbitaceae	Seed and fruit crop	228.8 Mbp	27,998	20	National Autonomous University of Mexico	2019, updated in 2021	contig N50 447 kbp scaffold N50 11.6 Mbp total coverage: 120x Illumina + 31x PacBio RSII
Cucurbita argyrosperma subsp. sororia	Cucurbitaceae	Wild relative of the silver-seed gourd	255.2 Mbp	30,592	20	National Autonomous University of Mexico	2021	contig N50 1.2 Mbp scaffold N50 12.1 Mbp total coverage: 213x Illumina HiSeq4000 + 75.4x PacBio Sequel
Gynostemma pentaphyllum	Cucurbitaceae	Adaptogen, anti-inflammatory & antioxidant, metabolic health	608.95 Mb	26,588	11		2023	contig N50 = 5.05Mb, scaffold N50 length = 56.38 Mb
Siraitia grosvenorii	Cucurbitaceae	Chinese medicine/sweetener	456.5 Mbp	30,565		Anhui Agricultural University	2018
Hippophae rhamnoides	Elaeagnaceae	used in food and cosmetics	730 Mbp	30,812			2022
Hippophae salicifolia	Elaeagnaceae	Understanding sex determination in dioecious plants	Female: 788.28 Mb Male haplotypes: 1,139.99 Mb and 1,097.34 Mb				2025	High-quality haplotype-resolved genome SDR located on Chr02
Hevea brasiliensis	Euphorbiaceae	the most economically important member of the genus Hevea					2013
Jatropha curcas Palawan	Euphorbiaceae	bio-diesel crop					2011
Manihot esculenta	Euphorbiaceae	Feeds >500m people in tropics	639.6 Mb	34,312		JGI	2012	Scaffold N50 of 29.2 Mb
Ricinus communis	Euphorbiaceae	oilseed crop	315.6 Mb	25,340		National Key R&D Program of China, the National Natural Science Foundation of China, the Guangdong Basic and Applied Basic Research Foundation, China, and the Shenzhen Science and Technology Program, China	2021	Scaffold N50 of 31.9 Mb
Excoecaria agallocha	Euphorbiaceae	Latex-secreting mangrove in tropical and subtropical regions	1,332.45 Mb	73,740			2024	Chromosome-level genome assembly 18 pseudomolecules Scaffold N50: 58.9 Mb BUSCO score: 98.4%
Tylosema esculentum	Fabaceae	Underutilized orphan legume	558.78 Mb				2025	High-quality de novo assembly using PacBio HiFi + Omni-C scaffolding. Tools: Hifiasm, HiCanu, HiRise Metrics: N50 = 22.68 Mb, L50 = 8 BUSCO used for completeness assessment.
Phaseolus vulgaris	Fabaceae	Major grain legume	560.3 Mb	29,925	11		2025	Assembly Status: Telomere-to-telomere assembly using PacBio HiFi, ONT ultra-long, and Hi-C. N50 = 55.11 Mb BUSCO = 99.5% QV = 54.86 20 of 22 telomeres identified.
Bauhinia purpurea	Fabaceae	One of the parental species of the hybrid Bauhinia x blakeana.	Estimated: 303.68 Mb Assembled: ~285.1 Mb Sequencing coverage: 136.6 Gb	38,735	14		2025	Scaffold N50: 21,596,737 bp Contig N50: 161,057 bp BUSCO completeness: C: 57.47%, S: 57.47%, D: 0%, F: 14.1%, M: 28.4% Hi-C anchoring: * Anchor size: 285,099,845 bp * Anchor rate: 99.89%
Bauhinia variegata	Fabaceae	Medium sized deciduous tree native to China	Estimated: ~314.49 Mb Sequencing coverage: 96.4 Gb Assembled: 308,677,314 bp	40,111	14		2025	Contig N50: 190,234 bp Scaffold N50: 2,613,106 bp BUSCO completeness: C: 94.8%, F: 1.2%, M: 4%
Ammopiptanthus nanus	Fabaceae	Only genus of evergreen broadleaf shrub	889 Mb	37,188			2018
Cajanus cajan var. Asha	Fabaceae	Model legume	590.4 Mb	33,324			2012	Scaffold N50 of 0.558 Mb
Arachis duranensis accession V14167	Fabaceae	Wild ancestor of peanut, an oilseed and grain legume crop					2016	Illumina 154x coverage, contig N50 22 kbp, scaffold N50 948 kbp
Amphicarpaea edgeworthii	Fabaceae	produces both aerial and subterranean fruits	299.1 Mb	27,899		Taishan Scholar Program, National Natural Science Foundation of China, the Innovation Program of SAAS	2021	Scaffold N50 of 27.2 Mb
Arachis ipaensis accession K30076	Fabaceae	Wild ancestor of peanut, an oilseed and grain legume crop					2016	Illumina 163x coverage, contig N50 23 kbp, scaffold N50 5,343 kbp
Cicer arietinum	Fabaceae	filling					2013
Cicer arietinum L.	Fabaceae						2013
Dalbergia odorifera	Fabaceae	Wood product and folk medicine	653 Mb	30,310	10	Chinese Academy of Forestry	2020	Contig N50: 5.92MbScaffold N50: 56.1 6Mb
Faidherbia albida	Fabaceae	Importante in the Sahel for raising bees		28,979			2018
Glycine max var. Williams 82	Fabaceae	Protein and oil crop	1115 Mbp	46,430			2010	Contig N50:189.4kbp Scaffold N50:47.8Mbp Sanger coverage ~8x WGS 955.1 Mbp assembled
Lablab purpureus	Fabaceae	Crop for human consumption		20,946			2018
Lotus japonicus	Fabaceae	Model legume					2008
Medicago truncatula	Fabaceae	Model legume					2011
Melilotus officinalis	Fabaceae	Forage and Chinese medicine	976.27 Mbp	50,022			2023
Phaseolus vulgaris	Fabaceae	Model bean	520 Mbp	31,638		JGI	2013?
Prosopis cineraria	Fabaceae	Desert mimosoid legume	691 Mbp	55,325			2023
Vicia faba L.	Fabaceae					Nature (journal)	2023
Vicia villosa	Fabaceae	Forage and cover crop	2035 Mb	69,562			2023	Scaffold N50 of 174.2 Mb
Vigna hirtella	Fabaceae	Wild legume	474.1 Mbp				2023
Vigna reflexo-pilosa	Fabaceae	Tetraploid wild legume	998.7 Mbp				2023
Vigna subterranea	Fabaceae	similar to peanuts		31,707			2018
Vigna trinervia Synonym of mung bean, V. radiata	Fabaceae		498.7 Mb				2023	Scaffold N50 of 1.7 Mb
Trifolium pratense L.	Fabaceae	often used to relieve symptoms of menopause, high cholesterol, and osteoporosis.					2022
Vicia sativa L.	Fabaceae	grain to livestock					2022
Macrotyloma uniflorum	Fabaceae	horsefeed					2021
Castanea mollissima	Fagaceae	cultivated nut	689 Mb	36,479		Beijing University of Agriculture	2019	Scaffold N50 of 57.3 Mb
Quercus robur	Fagaceae	Pedunculate oak, large diversity, somatic mutation studies	736 Mb	25,808	12		2018	https://www.oakgenome.fr/?page_id=587
Carya illinoinensis Pecan	Junglandaceae	snacks in various recipes	651.31 Mb				2019
Juglans mandshurica Maxim.	Junglandaceae	cultivated nut	548.7 Mb				2022
Juglans regia	Junglandaceae	cultivated nut	540 Mb			Chinese Academy of Forestry	2020
Juglans sigillata	Junglandaceae	cultivated nut	536.50 Mb			Nanjing Forestry University	2020	Illumina+Nanopore+bionano scaffold N50: 16.43 Mb, contig N50: 4.34 Mb
Linum usitatissimum	Linaceae	Crop	489.1 Mb	43,384		BGI et al.	2012	Scaffold N50 of 28.1 Mb
Bombax ceiba	Malvaceae	capsules with white fibre like cotton	895 Mb				2018
Durio zibethinus	Malvaceae	Tropical fruit tree	715.2 Mb	44,795			2017	Scaffold N50 of 22.7 Mb
Gossypium raimondii	Malvaceae	One of the putative progenitor species of tetraploid cotton					2013?
Theobroma cacao	Malvaceae	Flavouring crop					2010
Theobroma cacao cv. Matina 1-6	Malvaceae	Most widely cultivated cacao type					2013
Theobroma cacao	Malvaceae	domestication history of cacao					2018
Theobroma grandiflorum	Malvaceae	Cacao family tropical fruit	423 Mbp	31,381			2024
Azadirachta indica	Meliaceae	Source of terpenoids, such as biopesticide azadirachtin. Used in traditional medicine	281.7 Mb	25,767	14		2012 and 2011	Scaffold N50 of 19.5 Mb
Artocarpus nanchuanensis	Moraceae	Extremely endangered fruit tree	769.44 Mbp	39,596	28		2022
Moringa oleifera	Moringaceae	traditional herbal medicine		18,451			2018
Eucalyptus caleyi	Myrtaceae		589.32 Mb				2024
Eucalyptus urophylla	Myrtaceae	Fibre and timber crop	544.5 Mb				2023
Eucalyptus grandis	Myrtaceae	Fibre and timber crop	691.43 Mb				2011
Eucalyptus lansdowneana	Myrtaceae		633.52 Mb				2024
Eucalyptus marginata	Myrtaceae		512.89 Mb				2024
Eucalyptus pauciflora	Myrtaceae	Fibre and timber crop	594.87 Mb			ANU	2020	Nanopore + Illumina; contig N50: 3.23 Mb
Melaleuca alternifolia	Myrtaceae	terpene-rich essential oil with therapeutic and cosmetic uses around the world	362 Mb	37,226		Gigabyte, NCBI GenBank, GigaScience	2021	3128 scaffolds with a total length of 362 Mb
Melaleuca quinquenervia	Myrtaceae	source of Nerolina oil, medicinal properties	262 Mb	57,261	22	GigaScience, Oxford Academic, GigaScience Press	2023	assembled to individual chromosomes, N50 = over 22Mb
Averrhoa carambola	Oxalidales	fruit crop	335.49 Mb				2020
Carya cathayensis	Rosaceae	fruit crop	706.43 Mb				2019
Eriobotrya japonica	Rosaceae	Fruit tree	760.1 Mb	45,743		Shanghai Academy of Agricultural Sciences	2020	Illumina+Nanopore+Hi-C 17 chromosomes, scaffold N50: 39.7 Mb
Fragaria vesca	Rosaceae	Fruit crop	240 Mbp	34,809			2011	scaffold N50: 1.3 Mbp 454/Illumina/solid 39x coverage WGS
Gillenia trifoliata	Rosaceae	Traditional medicine	300.9 Mb	26,166	18		2021	Scaffold N50 of 32.1 Mb
Malus domestica	Rosaceae	Fruit crop	650.8 Mb	51,804			2010	Scaffold N50 of 37.7 Mb
Prunus amygdalus	Rosaceae	Fruit crop					2013?
Prunus avium cv. Stella	Rosaceae	Fruit crop					2013?
Prunus mume	Rosaceae	Fruit crop					2012
Prunus persica	Rosaceae	Fruit crop	227.4 Mb	26,412			2013	Scaffold N50 of 27.4 Mb
Prunus salicina	Rosaceae	Fruit crop	284.2 Mbp	24,448	8		2020	PacBio/Hi-C, with contig N50 of 1.78 Mb and scaffold N50 of 32.32 Mb.
Pyrus bretschneideri cv. Dangshansuli	Rosaceae	Fruit crop					2012
Pyrus communis cv. Doyenne du Comice	Rosaceae	Fruit crop					2013?
Rosa roxburghii	Rosaceae	Fruit crop	504 Mbp				2023
Rosa sterilis	Rosaceae	Fruit crop	981.2 Mb				2023
Rubus occidentalis	Rosaceae	Fruit crop	290 Mbp				2018
Citrus clementina	Rutaceae	Fruit crop					2013?
Citrus sinensis	Rutaceae	Fruit crop					2013?, 2013
Clausena lansium	Rutaceae	Fruit crop					2021
Populus trichocarpa	Salicaceae	Carbon sequestration, model tree, timber	510 Mbp 485 Mbp	73,013			2006	Scaffold N50: 19.5 Mbp Contig N50:552.8 Kbp WGS >=95 % cDNA found
Populus pruinosa	Salicaceae	farming and ranching	479.3 Mbp	35,131			2017
Acer truncatum	Sapindaceae	Tree producing nervonic acid	633.28 Mb	28,438			2020	contig N50 = 773.17 Kb; scaffold N50 = 46.36 Mb
Acer yangbiense	Sapindaceae	Endangered tree	664.9 Mb	28,320	13		2019	Scaffold N50 of 44.9 Mb
Dimocarpus longan	Sapindaceae	Fruit crop	471.88 Mb				2017
Xanthoceras sorbifolium Bunge	Sapindaceae	Fruit Crop	504.2 Mb	24,672			2019
Aquilaria sinensis	Thymelaeaceae	Fragrant wood	726.5 Mb	29,203			2020	Illumina+nanopore+Hi-C, scaffold N50: 88.78 Mb
Vitis vinifera 'Pinot Noir 40024'	Vitaceae	fruit crop	494.9 Mb	29,591			2007	Scaffold N50 of 26.9 Mb
Angophora floribunda	Myrtaceae	Forest tree
Corymbia maculata	Myrtaceae	Used for timber and used in horticulture
Eucalyptus brandiana	Myrtaceae						2024
Ormosia purpureiflora	Fabaceae	Food crop	1.42 to 1.58 Gb	50,517 to 55,061		BGI	2025
Ormosia emarginata	Fabaceae	Food crop	1.42 to 1.58 Gb	50,517 to 55,061		BGI	2025
Ormosia semicastrata	Fabaceae	Food crop	1.42 to 1.58 Gb	50,517 to 55,061		BGI	2025
Bauhinia blakeana	Fabaceae	Ornamental plant	290.97 Mb			BGI	2025
Sesbania cannabina	Fabaceae		2,087 Mb				2023

[Asterids]

Monocots">Monocotyledon">Monocots

Grasses

Other non-grasses

Press releases announcing sequencing

Not meeting criteria of the first paragraph of this article in being nearly full sequences with high quality, published, assembled and publicly available. This list includes species where sequences are announced in press releases or websites, but not in a data-rich publication in a refereed peer-review journal with DOI.

Corchorus olitorius, fibre plant 2017
Corchorus capsularis 2017Fraxinus excelsior, European ash