| Title | Publication Date | Dates Covered | ISBN |
| FoxTrot | 1989 | April 10, 1988 – January 22, 1989 | |
| Pass the Loot | 1990 | January 23, 1989 - November 5, 1989 | |
| Black Bart Says Draw | 1991 | November 6, 1989 - August 19, 1990 | |
| Eight Yards Down and Out | 1992 | August 20, 1990 - June 2, 1991 | |
| Bury My Heart at Fun-Fun Mountain | March 1993 | June 3, 1991 - March 15, 1992 | |
| Say Hello to Cactus Flats | August 1993 | March 16, 1992 - December 27, 1992 | |
| May the Force Be With Us, Please | March 1994 | December 28, 1992 – October 10, 1993 | |
| Take Us to Your Mall | March 1995 | October 11, 1993 – August 7, 1994 | |
| The Return of the Lone Iguana | April 1996 | August 8, 1994 – July 5, 1995 | |
| At Least This Place Sells T-Shirts | September 1996 | July 6, 1995 – April 28, 1996 | |
| Come Closer, Roger, There's a Mosquito on Your Nose | August 1997 | April 29, 1996 – March 3, 1997 | |
| Welcome to Jasorassic Park | April 1998 | March 4, 1997 – December 28, 1997 | |
| I'm Flying, Jack...I Mean, Roger | September 1999 | December 29, 1997 – November 8, 1998 | |
| Think iFruity | February 2000 | November 9, 1998 – September 12, 1999 | |
| Death by Field Trip | April 13, 2001 | September 13, 1999 – May 14, 2000 | |
| Encyclopedias Brown and White | September 6, 2001 | May 15, 2000 – December 31, 2000 | |
| His Code Name Was The Fox | April 1, 2002 | January 1, 2001 – August 25, 2001 | |
| Your Momma Thinks Square Roots Are Vegetables | April 11, 2003 | August 26, 2001 – April 14, 2002 | |
| Who's Up for Some Bonding? | August 1, 2003 | April 15, 2002 – December 1, 2002 | |
| Am I a Mutant, or What! | April 1, 2004 | December 2, 2002 – July 27, 2003 | |
| Orlando Bloom Has Ruined Everything | March 31, 2005 | July 28, 2003 – March 14, 2004 | |
| My Hot Dog Went Out, Can I Have Another? | August 1, 2005 | March 15, 2004 – October 31, 2004 | |
| How Come I'm Always Luigi? | April 1, 2006 | November 1, 2004 – June 26, 2005 | |
| Houston, You Have a Problem | March 1, 2007 | June 27, 2005 – February 19, 2006 | |
| And When She Opened the Closet, All the Clothes Were Polyester! | August 1, 2007 | February 20, 2006 – December 31, 2006 | |
| FoxTrot Sundaes | April 6, 2010 | January 7, 2007 – August 30, 2009 | |
| Jasotron: 2012 | November 6, 2012 | September 6, 2009 – April 22, 2012 | |
| Some Clever Title | March 22, 2016 | April 29, 2012 – December 28, 2014 | |
| Mother Is Coming | October 23, 2018 | January 4, 2015 - August 13, 2017 | |
| Deliciously FoxTrot | September 28, 2021 | August 20, 2017 - April 12, 2020 | |
| Big Dweeb Energy | April 30, 2024 | April 19, 2020 - December 25, 2022 | |
| Title | Date | ISBN | Notes |
| FoxTrot: The Works | 1990 | | Includes comics from FoxTrot and Pass the Loot. |
| FoxTrot en masse | June 1992 | | Includes comics from Black Bart Says Draw and Eight Yards Down and Out, plus a bonus Slug-Man comic. |
| Enormously FoxTrot | September 1994 | | Includes comics from Bury My Heart at Fun-Fun Mountain and Say Hello to Cactus Flats, plus bonus Paige and Pierre panels. |
| Wildly FoxTrot | September 1995 | | Includes comics from May the Force Be With Us, Please and Take Us to Your Mall, plus a look at the making of a FoxTrot Sunday strip. |
| FoxTrot Beyond a Doubt | March 1997 | | Includes comics from The Return of the Lone Iguana and At Least This Place Sells T-Shirts. |
| Camp FoxTrot | September 1998 | | Includes comics from Come Closer, Roger, There's a Mosquito on Your Nose and Welcome to Jasorassic Park, plus a letter from Bill Amend. |
| Assorted FoxTrot | November 2000 | | Includes comics from I'm Flying, Jack...I Mean, Roger and Think iFruity. |
| FoxTrot: Assembled with Care | November 2, 2002 | | Includes comics from Death by Field Trip, Encyclopedias Brown and White, and His Code Name Was The Fox. |
| FoxTrotius Maximus | September 1, 2004 | | Includes comics from Your Momma Thinks Square Roots Are Vegetables, Who's Up for Some Bonding?, and Am I a Mutant, or What!. |
| Jam-Packed FoxTrot | September 1, 2006 | | Includes comics from Orlando Bloom Has Ruined Everything, My Hot Dog Went Out, Can I Have Another?, and How Come I'm Always Luigi?. |
| Wrapped-Up FoxTrot | May 19, 2009 | | Includes comics from Houston, You Have A Problem, and And When She Opened the Closet, All Her Clothes Were Polyester!. |