| Island | Image | Coordinates | Counties | Description |
| Alameda Island | | | Alameda, San Francisco | This long island in San Francisco Bay is the main part of the City of Alameda. |
| Alcatraz Island | | | San Francisco | This island in San Francisco Bay once served as a lighthouse, a military fortification, a military prison, and as a federal prison until 1963. It is now part of the Golden Gate National Recreation Area. |
| Angel Island | | | Marin, San Francisco | With an area of, this island in San Francisco Bay processed approximately 1 million immigrants to the U.S. during 1910 to 1940. It is currently a state park. |
| Año Nuevo Island | | | San Mateo | Small Pacific island, about long, near Año Nuevo Point, south of the Golden Gate. It is protected by the Año Nuevo State Reserve as an important habitat for seabirds and other coastal wildlife. |
| Bair Island | | | San Mateo | This island in San Francisco Bay near Redwood City is part of the Don Edwards San Francisco Bay National Wildlife Refuge. |
| Bay Farm Island | | | Alameda | This former island in San Francisco Bay has been connected to the mainland. It is part of the City of Alameda. |
| Belvedere Island | | | Marin | This former island in Richardson Bay has been connected to the mainland. It is part of the City of Belvedere. |
| Bird Island | | | Marin | Small Pacific island between Point Bonita and Rodeo Cove. |
| Bird Rock | | | Marin | Small Pacific island west of Tomales Point, primarily a seabird colony. It covers. |
| Brewer Island | | | San Mateo | Coterminous with Foster City. |
| Brooks Island | | | Contra Costa | A island in San Francisco Bay south of Richmond, protected as part of the Brooks Island Regional Shoreline. |
| The Brothers | | | Contra Costa | Two small islands, East Brother and West Brother, located west of Point San Pablo. Each is about long. East Brother has a lighthouse and a bed and breakfast. |
| Castro Rocks | | | Contra Costa | Beneath the Richmond–San Rafael Bridge. |
| Coast Guard Island | | | Alameda | Located in the Oakland Estuary, this artificial island is part of the City of Alameda. It is home to various United States Coast Guard facilities. |
| Corinthian Island | | | Marin | This former island was joined to the mainland in the 1980s. It is split between the city of Belvedere and the town of Tiburon. |
| Dolphin Isle | | | San Mateo | Artificial island in Foster City Lagoon. Residential. |
| Greco Island | | | San Mateo | This island in San Francisco Bay near Redwood City is part of the Don Edwards San Francisco Bay National Wildlife Refuge. |
| Gull Rock | | | Marin | A Pacific island near Mount Tamalpais, about long. |
| Hog Island (Petaluma River) | | | Sonoma | Island in the Petaluma River wetlands. |
| Hog Island (Tomales Bay) | | | Marin | A island in Tomales Bay. |
| Hooks Island | | | Santa Clara | tidal salt marsh island in the Palo Alto Baylands Nature Preserve |
| Kent Island | | | Marin | An island in Bolinas Lagoon, near the town of Bolinas. About long. |
| Mare Island | | | Solano | An island in San Pablo Bay near Vallejo. About long, site of a major shipyard. |
| East Marin Island | | | Marin | Near San Rafael, California. Pictured on the right in the image. |
| West Marin Island | | | Marin | Near San Rafael, California. Pictured on the left in the image. |
| Mussel Rock | | | San Mateo | A stack in the Pacific Ocean near Daly City. About long. |
| The Needles | | | Marin | Rock islets at Lime Point in Fort Baker near the Golden Gate Bridge's northern cable house. |
| Newby Island | | | Santa Clara | Near Alviso, San Jose. |
| Ogilvie Island | | | Santa Clara | Near Alviso, San Jose. |
| Rat Rock | | | Marin | An tall rock north of China Camp. |
| Red Rock Island | | | Contra Costa, Marin and San Francisco | This uninhabited island is located in San Francisco Bay just south of the Richmond–San Rafael Bridge, near the meeting point of three counties. It is privately owned. |
| San Pedro Rock | | | San Mateo | A Pacific island near the city of Pacifica. About long. |
| Seal Rocks (San Francisco, California) | | | San Francisco | A series of large rocks in the Pacific Ocean that host a sea lion colony. |
| Seal Rock (San Mateo County, California) | | | San Mateo | A Pacific island south of Half Moon Bay, about long. |
| The Sisters | | | Marin | A pair of small islands in San Pablo Bay, south of Point Saint Pedro. |
| Treasure Island | | | San Francisco | This artificial island in San Francisco Bay is tied to Yerba Buena Island. It was dredged out of the bay to house the Golden Gate International Exposition of 1939-40. |
| Yerba Buena Island | | | San Francisco | This island in San Francisco Bay is home to a Coast Guard station. The San Francisco–Oakland Bay Bridge passes through it by means of a tunnel. |
| Island | Image | Coordinates | County | Description |
| Andrus Island | | | Sacramento | island, bounded by Sacramento River, Georgiana Slough, Mokelumne River, San Joaquin River, Jackson Slough, and Seven Mile Slough. |
| Bacon Island | | | San Joaquin | island, bounded by Connection Slough, Old River, Woodward Island, and Middle River |
| Bethel Island | | | Contra Costa | island, bounded by Taylor Slough, Piper Slough, Sand Mound Slough, and Dutch Slough |
| Bishop Tract | | | | |
| Brack Tract | | | | |
| Byron Tract | | | | |
| Bouldin Island | | | San Joaquin | island bounded by South Mokelumne River, Little Potato Slough, Potato Slough, and Mokelumne River. |
| Bradford Island | | | Contra Costa | island in the lower delta bounded by the San Joaquin River, False River and the Bradford Island canal/slough. Accessible only by Ferry via Jersey Island, just south of it. |
| Browns Island | | | Contra Costa | island, bounded by Middle Slough, New York Slough, and Suisun Bay. On the left in photo. |
| Canal Ranch Tract | | | | |
| Coney Island | | | Contra Costa | |
| Dead Horse Island | | | Sacramento | |
| Decker Island | | | Solano | Small island on the top-left in photo. |
| Empire Tract | | | | |
| Fabian Tract | | | | |
| Fay Island | | | San Joaquin | |
| Glanville Tract | | | | |
| Grand Island | | | Sacramento | |
| Hastings Tract | | | | |
| Holland Tract | | | | |
| Hotchkiss Tract | | | | |
| Jersey Island | | | Contra Costa | island, bounded by False River, Piper Slough, Taylor Slough, Dutch Slough and San Joaquin River. |
| Jones Tract | | upper: lower: | San Joaquin | island, bounded by Empire Cut, Whiskey Slough, Trapper Slough, and Middle River, 10 km east of Stockton |
| King Island | | | San Joaquin | island bounded by White Slough, Bishop Cut, Disappointment Slough, and Honker Cut |
| Kings Island | | | Contra Costa | island in Old River |
| Little Mandeville Island | | | San Joaquin | |
| Little Tinsley Island | | | | |
| Mandeville Island | | | San Joaquin | |
| McDonald Island | | | San Joaquin | island, bounded by San Joaquin River, Middle River, Latham Slough, and Empire Cut. |
| Medford Island | | | San Joaquin | |
| Merritt Island | | | Yolo | A island formed by the Sacramento River to the southeast and Elk Slough to the west, located directly across the Sacramento from Hood. |
| Mildred Island | | | San Joaquin | |
| Netherlands Island | | | | |
| Neville Island | | | | |
| New Hope Tract | | | | |
| Orwood Tract | | | | |
| Palm Tract | | | | |
| Pierson District | | | | |
| Prospect Island | | | Solano | |
| Quimby Island | | | Contra Costa | |
| Rhode Island | | | Contra Costa | |
| Rindge Tract | | | | |
| Rio Blanco Tract | | | | |
| Roberts Island | | | San Joaquin | |
| Ruff and Ready Island | | | San Joaquin River | An approximately 2.3-square-mile island in Stockton, California. A United States Navy installation built there during World War II was phased out in 1995 and later transferred to the Port of Stockton. |
| Ryer Island | | | Solano | , bounded by Miner Slough and Steamboat Slough. |
| Sargent Barhart Tract | | | | |
| Sherman Island | | | Sacramento | island bounded by the Sacramento River, Three Mile Slough, and the San Joaquin River. |
| Shima Tract | | | | |
| Shin Kee Tract | | | | |
| Staten Island | | | San Joaquin | island bounded and flanked by the North Mokelumne River and South Mokelumne River. |
| Stewart Tract | | | | |
| Sutter Island | | | Sacramento | Formed by Sacramento River to the northeast, Steamboat Slough to the southeast, and Sutter Slough to the west. Located across the Sacramento River from Paintersville. |
| Sycamore Island | | | | |
| Terminous Tract | | | | |
| Twitchell Island | | | Sacramento | , bounded by Seven Mile Slough, San Joaquin River, and Three Mile Slough |
| Tyler Island | | | Sacramento | |
| Union Island | | | San Joaquin | |
| Van Sickle Island | | | Solano | |
| Veale Tract | | | | |
| Venice Island | | | San Joaquin | island bounded by Potato Slough, Little Connection Slough, Stockton Deepwater Channel Venice Cut, and San Joaquin River. |
| Victoria Island | | | San Joaquin | island bounded by North Victoria Canal, Middle River, Victoria Canal, and Old River. |
| Webb Tract | | | | |
| West Island | | | Sacramento | |
| Winter Island | | | Contra Costa | On the right in photo. |
| Woodward Island | | | San Joaquin | island bounded by Bacon Island, Old River, Middle River, and Woodward Canal |
| Wright-Elmwood Tract | | | | |
| Island | Image | Coordinates | Description |
| Anacapa Island | | | Located off the coast of Ventura, California. It contains of land spread across three mountainous islets. The island has only three permanent residents. Part of the Greater Los Angeles Area. |
| Begg Rock | | | A high rock, located from San Nicolas Island. |
| Prince Island | | | Located near San Miguel Island and measures about. |
| San Clemente Island | | | Southernmost Channel Island, containing of land. It is long. An active U.S. Navy base is located on the island. In Los Angeles County. |
| San Juan Island | | | Historical San Juan Island, modern Cortes Bank, is a high seamount, an island submerged 6 feet and more, 96 mi SW of San Pedro, 111 mi W of Pt Loma, and 47 mi SW of San Clemente Island. The outermost feature in the Channel Islands, it has been visible as an island from elevations on San Clemente Island on clear days, and known for some of the world’s largest surf. Offshore from Orange County. |
| San Miguel Island | | | Westernmost Channel Island, measuring long, wide, and containing of land. The island is uninhabited, and is rarely visited. Part of the Greater Los Angeles Area. |
| San Nicolas Island | | | Is said to be the most remote island of the Channel Islands, and is used by the U.S. Navy as a weapons testing and training facility. It has no civilian inhabitants, but is inhabited by military personnel. It covers. Part of the Greater Los Angeles Area. |
| Santa Barbara Island | | | Smallest Channel Island at in area; it is located roughly between San Nicolas and Santa Catalina Islands. Part of the Greater Los Angeles Area. |
| Santa Catalina Island | | | The most populous of the Channel Islands, with 3,696 residents as of 2000. It is about long with a maximum width of. It covers. In Los Angeles County. |
| Santa Cruz Island | | | Santa Cruz Island measures long with an average width of, covering. It is the largest Channel Island. The island is now on public land, but was previously the largest privately owned island of the continental United States. Part of the Greater Los Angeles Area. |
| Santa Rosa Island | | | Santa Rosa Island occupies, and is the second largest Channel Island. The island has a permanent population of 2 persons, and is about off the coast of Santa Barbara, California. Part of the Greater Los Angeles area. |
| Shag Rock | | | Small islet located off the north shore of Santa Barbara Island, and is only about. |
| Sutil Island | | | Located off the southwest shore of Santa Barbara Island, and is about. It is named for a Spanish ship exploring the West Coast in an expedition led by Sebastián Vizcaíno. |