| Island | Image | Coordinates | Counties | Description |
| Alameda Island | | | Alameda, San Francisco | This long island in San Francisco Bay is the main part of the City of Alameda. |
| Alcatraz Island | | | San Francisco | This island in San Francisco Bay once served as a lighthouse, a military fortification, a military prison, and as a federal prison until 1963. It is now part of the Golden Gate National Recreation Area. |
| Angel Island | | | Marin, San Francisco | With an area of, this island in San Francisco Bay processed approximately 1 million immigrants to the U.S. during 1910 to 1940. It is currently a state park. |
| Año Nuevo Island | | | San Mateo | Small Pacific island, about long, near Año Nuevo Point, south of the Golden Gate. It is protected by the Año Nuevo State Reserve as an important habitat for seabirds and other coastal wildlife. |
| Bair Island | | | San Mateo | This island in San Francisco Bay near Redwood City is part of the Don Edwards San Francisco Bay National Wildlife Refuge. |
| Bay Farm Island | | | Alameda | This former island in San Francisco Bay has been connected to the mainland. It is part of the City of Alameda. |
| Belvedere Island | | | Marin | This former island in Richardson Bay has been connected to the mainland. It is part of the City of Belvedere. |
| Bird Island | | | Marin | Small Pacific island between Point Bonita and Rodeo Cove. |
| Bird Rock | | | Marin | Small Pacific island west of Tomales Point, primarily a seabird colony. It covers. |
| Brewer Island | | | San Mateo | Coterminous with Foster City. |
| Brooks Island | | | Contra Costa | A island in San Francisco Bay south of Richmond, protected as part of the Brooks Island Regional Shoreline. |
| The Brothers | | | Contra Costa | Two small islands, East Brother and West Brother, located west of Point San Pablo. Each is about long. East Brother has a lighthouse and a bed and breakfast. |
| Castro Rocks | | | Contra Costa | Beneath the Richmond–San Rafael Bridge. |
| Coast Guard Island | | | Alameda | Located in the Oakland Estuary, this artificial island is part of the City of Alameda. It is home to various United States Coast Guard facilities. |
| Corinthian Island | | | Marin | This former island was joined to the mainland in the 1980s. It is split between the city of Belvedere and the town of Tiburon. |
| Dolphin Isle | | | San Mateo | Artificial island in Foster City Lagoon. Residential. |
| Greco Island | | | San Mateo | This island in San Francisco Bay near Redwood City is part of the Don Edwards San Francisco Bay National Wildlife Refuge. |
| Gull Rock | | | Marin | A Pacific island near Mount Tamalpais, about long. |
| Hog Island | | | Sonoma | Island in the Petaluma River wetlands. |
| Hog Island | | | Marin | A island in Tomales Bay. |
| Hooks Island | | | Santa Clara | tidal salt marsh island in the Palo Alto Baylands Nature Preserve |
| Kent Island | | | Marin | An island in Bolinas Lagoon, near the town of Bolinas. About long. |
| Mare Island | | | Solano | An island in San Pablo Bay near Vallejo. About long, site of a major shipyard. |
| East Marin Island | | | Marin | Near San Rafael, California. Pictured on the right in the image. |
| West Marin Island | | | Marin | Near San Rafael, California. Pictured on the left in the image. |
| Mussel Rock | | | San Mateo | A stack in the Pacific Ocean near Daly City. About long. |
| The Needles | | | Marin | Rock islets at Lime Point in Fort Baker near the Golden Gate Bridge's northern cable house. |
| Newby Island | | | Santa Clara | Near Alviso, San Jose. |
| Ogilvie Island | | | Santa Clara | Near Alviso, San Jose. |
| Rat Rock | | | Marin | An tall rock north of China Camp. |
| Red Rock Island | | | Contra Costa, Marin and San Francisco | This uninhabited island is located in San Francisco Bay just south of the Richmond–San Rafael Bridge, near the meeting point of three counties. It is privately owned. |
| San Pedro Rock | | | San Mateo | A Pacific island near the city of Pacifica. About long. |
| Seal Rocks | | | San Francisco | A series of large rocks in the Pacific Ocean that host a sea lion colony. |
| Seal Rock | | | San Mateo | A Pacific island south of Half Moon Bay, about long. |
| The Sisters | | | Marin | A pair of small islands in San Pablo Bay, south of Point Saint Pedro. |
| Treasure Island | | | San Francisco | This artificial island in San Francisco Bay is tied to Yerba Buena Island. It was dredged out of the bay to house the Golden Gate International Exposition of 1939-40. |
| Yerba Buena Island | | | San Francisco | This island in San Francisco Bay is home to a Coast Guard station. The San Francisco–Oakland Bay Bridge passes through it by means of a tunnel. |
| Island | Image | Coordinates | Description |
| Aulone Island and Great Arch Rock | | | North of Southeast Farallon Island, measuring wide and long. |
| Drunk Uncle Islets | | | Group of small islets north of Maintop Island. |
| Farallón Viscaíno | | | |
| Middle Farallon Island | | | Medium-sized islet northwest of Southeast Farallon Island. It is long and has an area of. |
| North Farallon Island | | | Medium-sized islet long and high, covering. |
| Peñasco Quebrado | | | |
| Piedra Guadalupe | | | |
| Island of St. James | | | Medium-sized islet in size, measuring long and high. |
| Sea Lion Rock | | | Small islet northwest of Aulon Island, about long. |
| Seal Rock | | | Small islet south of Southeast Farallon Island, with a maximum height of. |
| Maintop Island | | | West of Southeast Farallon Island, and has a maximum height of. |
| Southeast Farallon Island | | | Is the largest of the Farallons, covering. It is the only inhabited Farallon Island, and is also the site of Farallon Island Light. |
| Sugarloaf Island | | | Directly to the northeast of Aulone and Great Arch Rock, about high. |
| Island | Image | Coordinates | County | Description |
| Chipps Island | | | Solano | |
| Dutton Island | | | Solano | |
| Freeman Island | | | Solano | Small island, second from top on left hand of frame. |
| Grizzly Island | | | Solano | |
| Hammond Island | | | Solano | |
| Joice Island | | | Solano | A marshy island long, north of Grizzly Bay. |
| Morrow Island | | | Solano | A small island that has an elevation of 2 meters- 7 feet. |
| Point Buckler Island | | | Solano | A private marshy island of, with some history as a kiteboarding destination. |
| Roe Island | | | Solano | In Suisun Bay. On far right of picture. |
| Ryer Island | | | Solano | island, between Suisun Bay and Suisun Cutoff. About long. Largest island in the photo. |
| Seal Islands | | | Contra Costa | In Suisun Bay. |
| Simmons Island | | | Solano | |
| Snag Island | | | Solano | Smallest island in the photo, top center. |
| Van Sickle Island | | | Solano | An island long at the junction of the Sacramento River, San Joaquin River, and Suisun Bay. |
| Wheeler Island | | | Solano | |