Chromosome 13


Chromosome 13 is one of the 23 pairs of chromosomes in humans. People normally have two copies of this chromosome. Chromosome 13 spans about 113 million base pairs and represents between 3.5 and 4% of the total DNA in cells.

Genes

Number of genes

The following are some of the gene count estimates of human chromosome 13. Because researchers use different approaches to genome annotation their predictions of the number of genes on each chromosome varies. Among various projects, the collaborative consensus coding sequence project takes an extremely conservative strategy. So CCDS's gene number prediction represents a lower bound on the total number of human protein-coding genes.
Estimated byProtein-coding genesNon-coding RNA genesPseudogenesSourceRelease date
CCDS3082016-09-08
HUGO [Gene Nomenclature Committee|HGNC]3093234692017-05-12
Ensembl3245863732017-03-29
UniProt3292018-02-28
NCBI3436224812017-05-19

Gene list

The following is a partial list of genes on human chromosome 13. For complete list, see the link in the infobox on the right.

Diseases and disorders

The following diseases and disorders are some of those related to genes on chromosome 13:
The following conditions are caused by changes in the structure or number of copies of chromosome 13:
  • Retinoblastoma: A small percentage of retinoblastoma cases are caused by deletions in the region of chromosome 13 containing the RB1 gene. Children with these chromosomal deletions may also have intellectual disability, slow growth, and characteristic facial features. Researchers have not determined which other genes are located in the deleted region, but a loss of several genes is likely responsible for these developmental problems.
  • Trisomy 13: Trisomy 13 occurs when each cell in the body has three copies of chromosome 13 instead of the usual two copies. Trisomy 13 can also result from an extra copy of chromosome 13 in only some of the body's cells. In a small percentage of cases, trisomy 13 is caused by a rearrangement of chromosomal material between chromosome 13 and another chromosome. As a result, a person has the two usual copies of chromosome 13, plus extra material from chromosome 13 attached to another chromosome. These cases are called translocation trisomy 13. Extra material from chromosome 13 disrupts the course of normal development, causing the characteristic signs and symptoms of trisomy 13. Researchers are not yet certain how this extra genetic material leads to the features of the disorder, which include severely abnormal cerebral functions, a small cranium, retardation, non functional eyes and heart defects.
  • Other chromosomal conditions: Partial monosomy 13q is a rare chromosomal disorder that results when a piece of the long arm of chromosome 13 is missing. Infants born with partial monosomy 13q may exhibit low birth weight, malformations of the head and face, skeletal abnormalities, and other physical abnormalities. Intellectual disability is characteristic of this condition. The mortality rate during infancy is high among individuals born with this disorder. Almost all cases of partial monosomy 13q occur randomly for no apparent reason.

    Cytogenetic band

Chr.ArmBandISCN
start
ISCN
stop
Basepair
start
Basepair
stop
StainDensity
13p130282gvar
13p12282620stalk
13p11.26201015gvar
13p11.110151198acen
13q1111981353acen
13q12.1113531536gneg
13q12.1215361635gpos25
13q12.1316351790gneg
13q12.217901888gpos25
13q12.318882114gneg
13q13.121142255gpos50
13q13.222552367gneg
13q13.323672649gpos75
13q14.1126492931gneg
13q14.1229313030gpos25
13q14.1330303128gneg
13q14.231283311gpos50
13q14.333113537gneg
13q21.135373762gpos100
13q21.237623889gneg
13q21.3138894058gpos75
13q21.3240584199gneg
13q21.3341994439gpos100
13q22.144394565gneg
13q22.245654678gpos50
13q22.346784791gneg
13q31.147915087gpos100
13q31.250875171gneg
13q31.351715355gpos100
13q32.153555510gneg
13q32.255105636gpos25
13q32.356365834gneg
13q33.158345989gpos100
13q33.259896087gneg
13q33.360876256gpos100
13q3462566510gneg