| Name | Number | Bank | Mouth | Political subdivision | Source | Political subdivision |
| Richland Run | 1 | Right | | Elk Township, Clarion County | | Washington Township, Clarion County |
| Prairie Run | 2 | Right | | Pinegrove Township, Venango County | | Pinegrove Township, Venango County |
| Cogley Run | 3 | Left | | Pinegrove Township, Venango County | | Ashland Township, Clarion County |
| Little East Sandy Creek | 4 | Left | | Cranberry Township, Venango County | | Ashland Township, Clarion County |
| Tarkiln Run | 5 | Right | | Cranberry Township, Venango County | | Pinegrove Township, Venango County |
| Pine Run | 6 | Left | | Rockland Township, Venango County | | Ashland Township, Clarion County |
| Shaw Run | 7 | Left | | Rockland Township, Venango County | | Rockland Township, Venango County |
| Shannon Run | 8 | Left | | Cranberry Township, Venango County | | Rockland Township, Venango County |
| Pryor Run | 9 | Right | | Cranberry Township, Venango County | | Cranberry Township, Venango County |
| Halls Run | 10 | Right | | Cranberry Township, Venango County | | Cranberry Township, Venango County |
| Browns Run | 11 | Left | | Rockland Township, Venango County | | Rockland Township, Venango County |
| Porcupine Run | 12 | Left | | Rockland Township, Venango County | | Rockland Township, Venango County |
| Burford Run | 13 | Right | | Cranberry Township, Venango County | | Cranberry Township, Venango County |
| Name | Number | Bank | Mouth | Political subdivision | Source | Political subdivision |
| West Branch Clarion River | 1 | Right | | Johnsonburg, Pennsylvania | | Mount Jewett, Pennsylvania |
| East Branch Clarion River | 2 | Left | | Johnsonburg, Pennsylvania | | Sergeant Township, McKean County |
| Johnson Run | 3 | Right | | Johnsonburg, Pennsylvania | | Ridgway Township, Elk County |
| Powers Run | 4 | Left | | Johnsonburg, Pennsylvania | | St. Marys, Pennsylvania |
| Riley Run | 5 | Right | | Ridgway Township, Elk County | | Ridgway Township, Elk County |
| Little Mill Creek | 6 | Right | | Ridgway Township, Elk County | | Jones Township, Elk County |
| Mason Creek | 7 | Right | | Ridgway Township, Elk County | | Ridgway Township, Elk County |
| Elk Creek | 8 | Left | | Ridgway, Pennsylvania | | St. Marys, Pennsylvania |
| Island Run | 9 | Left | | Ridgway Township, Elk County | | Ridgway Township, Elk County |
| Big Mill Creek | 10 | Right | | Ridgway Township, Elk County | | Jones Township, Elk County |
| Connerville Run | 11 | Right | | Ridgway Township, Elk County | | Ridgway Township, Elk County |
| Dog Hollow Run | 12 | Left | | Ridgway Township, Elk County | | Ridgway Township, Elk County |
| Gillis Run | 13 | Right | | Ridgway Township, Elk County | | Ridgway Township, Elk County |
| Little Toby Creek | 14 | Left | | Spring Creek Township, Elk County | | Fox Township, Elk County |
| Bear Creek | 15 | Right | | Spring Creek Township, Elk County | | Highland Township, Elk County |
| Mahood Run | 16 | Left | | Spring Creek Township, Elk County | | Spring Creek Township, Elk County |
| Beech Bottom Run | 17 | Left | | Spring Creek Township, Elk County | | Spring Creek Township, Elk County |
| Lake City Run | 18 | Left | | Spring Creek Township, Elk County | | Spring Creek Township, Elk County |
| Crow Run | 19 | Right | | Spring Creek Township, Elk County | | Spring Creek Township, Elk County |
| Irwin Run | 20 | Right | | Spring Creek Township, Elk County | | Spring Creek Township, Elk County |
| Spring Creek | 21 | Right | | Spring Creek Township, Elk County | | Howe Township, Forest County |
| Maxwell Run | 22 | Left | | Spring Creek Township, Elk County | | Spring Creek Township, Elk County |
| Elliott Run | 23 | Right | | Spring Creek Township, Elk County | | Millstone Township, Elk County |
| Daugherty Run | 24 | Left | | Heath Township, Jefferson County | | Spring Creek Township, Elk County |
| Raught Run | 25 | Left | | Heath Township, Jefferson County | | Heath Township, Jefferson County |
| Painter Run | 26 | | | Heath Township, Jefferson County | | Millstone Township, Elk County |
| Church Run | 27 | Right | | Millstone Township, Elk County | | Millstone Township, Elk County |
| Clyde Run | 28 | Right | | Heath Township, Jefferson County | | Millstone Township, Elk County |
| Callen Run | 29 | Left | | Heath Township, Jefferson County | | Polk Township, Jefferson County |
| Cline Run | 30 | Right | | Millstone Township, Elk County | | Millstone Township, Elk County |
| Wyncoop Run | 31 | Right | | Heath Township, Jefferson County | | Millstone Township, Elk County |
| Leeper Run | 32 | Left | | Heath Township, Jefferson County | | Heath Township, Jefferson County |
| Pine Run | 33 | Left | | Heath Township, Jefferson County | | Heath Township, Jefferson County |
| Millstone Creek | 34 | Right | | Millstone Township, Elk County | | Millstone Township, Elk County |
| Shippen Run | 35 | Right | | Barnett Township, Forest County | | Barnett Township, Forest County |
| Clear Creek | 36 | Left | | Barnett Township, Jefferson County | | Heath Township, Jefferson County |
| Tadler Run | 37 | Left | | Barnett Township, Jefferson County | | Barnett Township, Jefferson County |
| Cherry Run | 38 | Right | | Barnett Township, Forest County | | Barnett Township, Forest County |
| Maple Creek | 39 | Right | | Barnett Township, Jefferson County | | Jenks Township, Forest County |
| Coleman Run | 40 | Right | | Barnett Township, Forest County | | Farmington Township, Clarion County |
| Troutman Run | 41 | Right | | Barnett Township, Jefferson County | | Barnett Township, Forest County |
| Henry Run | 42 | Right | | Barnett Township, Jefferson County | | Barnett Township, Forest County |
| Toms Run | 43 | Right | | Barnett Township, Forest County | | Farmington Township, Clarion County |
| Henry Run | 44 | Right | | Farmington Township, Clarion County | | Farmington Township, Clarion County |
| Cathers Run | 45 | Left | | Millcreek Township, Clarion County | | Eldred Township, Jefferson County |
| Watson Run | 46 | Right | | Farmington Township, Clarion County | | Farmington Township, Clarion County |
| Maxwell Run | 47 | Left | | Millcreek Township, Clarion County | | Millcreek Township, Clarion County |
| Callihan Run | 48 | Right | | Highland Township, Clarion County | | Highland Township, Clarion County |
| Blyson Run | 49 | Left | | Millcreek Township, Clarion County | | Millcreek Township, Clarion County |
| McGourvey Run | 50 | Right | | Millcreek Township, Clarion County | | Highland Township, Clarion County |
| Mill Creek | 51 | Left | | Millcreek Township, Clarion County | | Eldred Township, Jefferson County |
| Reed Run | 52 | Right | | Highland Township, Clarion County | | Highland Township, Clarion County |
| Toby Creek | 53 | Right | | Highland Township, Clarion County | | Farmington Township, Clarion County |
| Trout Run | 54 | Left | | Monroe Township, Clarion County | | Clarion Township, Clarion County |
| Courtleys Run | 55 | Left | | Monroe Township, Clarion County | | Monroe Township, Clarion County |
| Piney Reservoir | 56 | | | Piney Township, Clarion County | | |
| Piney Dam | 57 | | | Paint Township, Clarion County | | |
| Piney Creek | 58 | Left | | Piney Township, Clarion County | | Limestone Township, Clarion County |
| Deer Creek | 59 | Right | | Beaver Township, Clarion County | | Ashland Township, Clarion County |
| Canoe Creek | 60 | Right | | Beaver Township, Clarion County | | Ashland Township, Clarion County |
| Beaver Creek | 61 | Right | | Licking Township, Clarion County | | Ashland Township, Clarion County |
| Licking Creek | 62 | Left | | Licking Township, Clarion County | | Porter Township, Clarion County |
| Turkey Run | 63 | Right | | Richland Township, Clarion County | | Salem Township, Clarion County |
| Name | Number | Bank | Mouth | Political subdivision | Source | Political subdivision |
| Sandy Lick Creek | 1 | Left | | Brookville, Pennsylvania | | Sandy Township, Clearfield County |
| North Fork Creek | 2 | Right | | Brookville, Pennsylvania | | Polk Township, Jefferson County |
| Clement Run | 3 | Right | | Rose Township, Jefferson County | | Rose Township, Jefferson County |
| Rattlesnake Run | 4 | Left | | Clover Township, Jefferson County | | Rose Township, Jefferson County |
| Thompson Run | 5 | Right | | Clover Township, Jefferson County | | Clover Township, Jefferson County |
| Simpson Run | 6 | Right | | Clover Township, Jefferson County | | Union Township, Jefferson County |
| Welch Run | 7 | Right | | Clover Township, Jefferson County | | Corsica |
| Runaway Run | 8 | Right | | Summerville | | Limestone Township, Clarion County |
| Carrier Run | 9 | Left | | Clover Township, Jefferson County | | Clover Township, Jefferson County |
| Beaver Run | 10 | Left | | Beaver Township, Jefferson County | | Oliver Township, Jefferson County |
| Tarkiln Run | 11 | Left | | Beaver Township, Jefferson County | | Beaver Township, Jefferson County |
| Red Run | 12 | Left | | Beaver Township, Jefferson County | | Beaver Township, Jefferson County |
| Patton Run | 13 | Right | | Beaver Township, Jefferson County | | Redbank Township, Clarion County |
| Little Sandy Creek | 14 | Left | | Redbank Township, Armstrong County | | McCalmont Township, Jefferson County |
| Pine Creek | 15 | Left | | Redbank Township, Clarion County | | Limestone Township, Clarion County |
| Miller Run | 16 | Right | | Redbank Township, Clarion County | | Redbank Township, Clarion County |
| Town Run | 17 | Right | | Redbank Township, Clarion County | | Redbank Township, Clarion County |
| Middle Run> | 18 | Right | | Redbank Township, Clarion County | | Redbank Township, Clarion County |
| Leisure Run | 19 | Right | | New Bethlehem | | Redbank Township, Clarion County |
| Citizens Water Company Dam | 20 | | | New Bethlehem," " | | |
| Long Run | 21 | Right | | Porter Township, Clarion County | | Porter Township, Clarion County |
| Leatherwood Creek | 22 | Right | | Porter Township, Clarion County | | Porter Township, Clarion County |
| Middle Run | 23 | Right | | Porter Township, Clarion County | | Porter Township, Clarion County |
| Rock Run | 24 | Right | | Madison Township, Armstrong County | | Porter Township, Clarion County |
| Wildcat Run | 25 | Right | | Madison Township, Clarion County | | Toby Township, Clarion County |
| Name | Number | Bank | Mouth | Political subdivision | Source | Political subdivision |
| Williams Run | 1 | Left | | Polk Township, Jefferson County | | Snyder Township, Jefferson County |
| Muddy Run | 2 | Right | | Polk Township, Jefferson County | | Polk Township, Jefferson County |
| Bearpen Run | 3 | Left | | Polk Township, Jefferson County | | Snyder Township, Jefferson County |
| Manners Dam Run | 4 | Left | | Polk Township, Jefferson County | | Snyder Township, Jefferson County |
| Hetrick Run | 5 | Right | | Polk Township, Jefferson County | | Polk Township, Jefferson County |
| Lucas Run | 6 | Left | | Polk Township, Jefferson County | | Snyder Township, Jefferson County |
| South Branch North Fork Redbank Creek | 7 | Left | | Polk Township, Jefferson County | | Snyder Township, Jefferson County |
| Acy Run | 8 | Left | | Polk Township, Jefferson County | | Warsaw Township, Jefferson County |
| Seneca Run | 9 | Left | | Warsaw Township, Jefferson County | | Warsaw Township, Jefferson County |
| Windfall Run | 10 | Right | | Warsaw Township, Jefferson County | | Polk Township, Jefferson County |
| Clear Run | 11 | Right | | Warsaw Township, Jefferson County | | Heath Township, Jefferson County |
| Tarkiln Run | 12 | Right | | Warsaw Township, Jefferson County | | Eldred Township, Jefferson County |
| Shippen Run | 13 | | | Warsaw Township, Jefferson County | | Eldred Township, Jefferson County |
| Craft Run | 14 | Right | | Warsaw Township, Jefferson County | | Eldred Township, Jefferson County |
| Red Lick Run | 15 | Right | | Pine Creek Township, Jefferson County | | Eldred Township, Jefferson County |
| Yeomans Run | 16 | | | Rose Township, Jefferson County | | Eldred Township, Jefferson County |
| Sugarcamp Run | 17 | Left | | Pine Creek Township, Jefferson County | | Warsaw Township, Jefferson County |
| Sugar Camp Run | 18 | Right | | Rose Township, Jefferson County | | Rose Township, Jefferson County |
| Brookville Reservoir | 19 | | | Brookville, Pennsylvania | | |
| Brookville Waterworks Dam | 20 | | | Brookville, Pennsylvania | | |
| Name | Number | Bank | Mouth | Political subdivision | Source | Political subdivision |
| Lake Sabula | 1 | | | Sandy Township, Clearfield County | | |
| Coal Run | 2 | Left | | Sandy Township, Clearfield County | | Union Township |
| Muddy Run | 3 | Right | | Sandy Township, Clearfield County | | Sandy Township, Clearfield County |
| Narrows Creek | 4 | Right | | Sandy Township, Clearfield County | | Sandy Township, Clearfield County |
| Gravel Lick Run | 5 | Right | | Sandy Township, Clearfield County | | Sandy Township, Clearfield County |
| Laborde Branch | 6 | Left | | Sandy Township, Clearfield County | | Brady Township, Clearfield County |
| Reisinger Run | 7 | Left | | DuBois, Pennsylvania | | Brady Township, Clearfield County |
| Pentz Run | 8 | Left | | DuBois | | Brady Township, Clearfield County |
| Beaver Run | 9 | Right | | DuBois | | Sandy Township, Clearfield County |
| Clear Run | 10 | Right | | DuBois | | Sandy Township, Clearfield County |
| Slab Run | 11 | Right | | Sandy Township, Clearfield County | | Sandy Township, Clearfield County |
| Wolf Run | 12 | Right | | Sandy Township, Clearfield County | | Sandy Township, Clearfield County |
| Panther Run | 13 | Right | | Winslow Township, Jefferson County | | Washington Township, Jefferson County |
| Pitchpine Run | 14 | Left | | Reynoldsville | | Winslow Township, Jefferson County |
| Soldier Run | 15 | Left | | Reynoldsville | | Sandy Township, Clearfield County |
| Trout Run | 16 | Left | | Winslow Township, Jefferson County | | Winslow Township, Jefferson County |
| Schoolhouse Run | 17 | Left | | Winslow Township, Jefferson County | | Winslow Township, Jefferson County |
| O'Donnell Run | 18 | Right | | Winslow Township, Jefferson County | | Washington Township, Jefferson County |
| Camp Run | 19 | Left | | Knox Township, Jefferson County | | McCalmont Township, Jefferson County |
| Fuller Run | 20 | Left | | Knox Township, Jefferson County | | Knox Township, Jefferson County |
| Cable Run | 21 | Right | | Pine Creek Township, Jefferson County | | Pine Creek Township, Jefferson County |
| Mill Creek | 22 | Right | | Pine Creek Township, Jefferson County | | Snyder Township, Jefferson County |
| Horm Run | 22.1 | Left | | Washington Township, Jefferson County | | Washington Township, Jefferson County |
| Fivemile Run | 22.2 | Left | | Pine Creek Township, Jefferson County | | Washington Township, Jefferson County |
| Little Mill Creek | 22.3 | Right | | Pine Creek Township | | Warsaw Township |
| Fivemile Run | 23 | Left | | Pine Creek Township, Jefferson County | | Knox Township, Jefferson County |
| Name | Number | Bank | Mouth | Political subdivision | Source | Political subdivision |
| East Branch Mahoning Creek | 1 | Left | | Henderson Township, Jefferson County | | Brady Township, Clearfield County |
| Stump Creek | 2 | Right | | Henderson Township, Jefferson County | | Brady Township, Clearfield County |
| Big Run | 3 | - | | Big Run | | McCalmont Township, Jefferson County |
| Rock Run | 4 | Right | | Bell Township, Jefferson County | | Bell Township, Jefferson County |
| Graffius Run | 5 | Right | | Bell Township, Jefferson County | | Bell Township, Jefferson County |
| Jackson Run | 6 | Left | | Bell Township, Jefferson County | | Gaskill Township, Jefferson County |
| Canoe Creek | 7 | Left | | Bell Township, Jefferson County | | North Mahoning Township, Indiana County |
| Elk Run | 8 | Right | | Punxsutawney | | McCalmont Township, Jefferson County |
| Sawmill Run | 9 | Right | | Punxsutawney | | Oliver Township, Jefferson County |
| Rose Run | 10 | Right | | Perry Township, Jefferson County | | Perry Township, Jefferson County |
| Nicely Run | 11 | Right | | Perry Township, Jefferson County | | Perry Township, Jefferson County |
| Dutch Run | 12 | Left | | Perry Township, Jefferson County | | North Mahoning Township, Indiana County |
| Perryville Run | 13 | Right | | Perry Township, Jefferson County | | Perry Township, Jefferson County |
| Foundry Run | 14 | Right | | Perry Township, Jefferson County | | Perry Township, Jefferson County |
| Steer Run | 15 | Right | | West Mahoning Township, Indiana County | | Porter Township, Jefferson County |
| Carr Run | 16 | Left | | West Mahoning Township, Indiana County | | North Mahoning Township, Indiana County |
| Hamilton Run | 17 | Right | | West Mahoning Township, Indiana County | | Porter Township, Jefferson County |
| Sugarcamp Run | 18 | Right | | West Mahoning Township, Indiana County | | Porter Township, Jefferson County |
| Little Mahoning Creek | 19 | Left | | West Mahoning Township, Indiana County | | Green Township, Indiana County |
| Foundry Run | 20 | Right | | Wayne Township, Armstrong County | | Porter Township, Jefferson County |
| Mahoning Creek Lake | 21 | - | | Wayne Township, Armstrong County | | |
| Glade Run | 22 | Left | | Wayne Township, Armstrong County | | West Mahoning Township, Indiana County |
| Mahoning Creek Dam | 23 | - | | Redbank Township, Armstrong County | | |
| Camp Run | 24 | Left | | Wayne Township, Armstrong County | | Wayne Township, Armstrong County |
| Pine Run | 25 | Right | | Redbank Township, Armstrong County | | Perry Township, Jefferson County |
| Little Mudlick Creek | 26 | Right | | Redbank Township, Armstrong County | | Redbank Township, Armstrong County |
| Cathcart Run | 27 | Right | | Mahoning Township, Armstrong County | | Mahoning Township, Armstrong County |
| Hamilton Run | 28 | Right | | Mahoning Township, Armstrong County | | Mahoning Township, Armstrong County |
| Cave Run | 29 | Left | | Mahoning Township, Armstrong County | | Mahoning Township, Armstrong County |
| Scrubgrass Creek | 30 | Left | | Pine Township, Armstrong County | | Wayne Township, Armstrong County |
| Name | Number | Bank | Mouth | Political subdivision | Source | Political subdivision |
| Rayne Run | 1 | Right | | Rayne Township, Indiana County | | East Mahoning Township, Indiana County |
| Brush Run | 2 | Right | | Rayne Township, Indiana County | | Rayne Township, Indiana County |
| Pine Run | 3 | Right | | Rayne Township, Indiana County | | East Mahoning Township, Indiana County |
| Twomile Run | 4 | Right | | Washington Township, Indiana County | | Washington Township, Indiana County |
| McKee Run | 5 | Left | | Creekside | | Rayne Township, Indiana County |
| Fulton Run | 6 | Left | | White Township, Indiana County | | White Township, Indiana County |
| Dark Hollow Run | 7 | Right | | Armstrong Township, Indiana County | | Washington Township, Indiana County |
| Mitchell Run | 8 | Right | | Armstrong Township, Indiana County | | Washington Township, Indiana County |
| Curry Run | 9 | Left | | Armstrong Township, Indiana County | | Armstrong Township, Indiana County |
| -Cheese Run | 9.1 | Right | | Armstrong Township, Indiana County | | White Township, Indiana County |
| Anthony Run | 10 | Left | | Armstrong Township, Indiana County | | Armstrong Township, Indiana County |
| Walker Run | 11 | Left | | Armstrong Township, Indiana County | | Armstrong Township, Indiana County |
| Plum Creek | 12 | Right | | Plumcreek Township, Armstrong County | | Plumcreek Township, Armstrong County |
| -South Branch Plum Creek | 12.1 | Left | | Plumcreek Township, Armstrong County | | East Mahoning Township, Indiana County |
| -North Branch Plum Creek | 12.2 | Right | | Plumcreek Township, Armstrong County | | South Mahoning Township, Indiana County |
| -Cessna Run | 12.3 | Right | | Plumcreek Township, Armstrong County | | Cowanshannock Township, Armstrong County |
| -Dutch Run | 12.4 | Left | | Plumcreek Township, Armstrong County | | Washington Township, Indiana County |
| Gobblers Run | 13 | Left | | South Bend Township, Armstrong County | | Armstrong Township, Indiana County |
| Craig Run | 14 | Left | | South Bend Township, Armstrong County | | Young Township, Indiana County |
| Lindsay Run | 15 | Left | | South Bend Township, Armstrong County | | South Bend Township, Armstrong County |
| Sugar Run | 16 | Right | | South Bend Township, Armstrong County | | Plumcreek Township, Armstrong County |
| Fagley Run | 17 | Right | | Burrell Township, Armstrong County | | Plumcreek Township, Armstrong County |
| Crooked Creek Lake | 18 | - | | Burrell Township, Armstrong County | | |
| Cherry Run | 19 | Right | | Burrell Township, Armstrong County | | Plumcreek Township, Armstrong County |
| Pine Run | 20 | Right | | Burrell Township, Armstrong County | | Kittanning Township, Armstrong County |
| Beers Run | 21 | Left | | Burrell Township, Armstrong County | | Bethel Township, Armstrong County |
| Coal Bank Run | 22 | Left | | Bethel Township, Armstrong County | | Bethel Township, Armstrong County |
| Horney Camp Run | 23 | Right | | Burrell Township, Armstrong County | | Kittanning Township, Armstrong County |
| Paradise Beach | 24 | Left | | Bethel Township, Armstrong County | | |
| Elbow Run | 25 | Right | | Kittanning Township, Armstrong County | | Kittanning Township, Armstrong County |
| Crooked Creek Dam | 26 | - | | Manor Township, Armstrong County | | |
| Campbell Run | 27 | Right | | Manor Township, Armstrong County | | Kittanning Township, Armstrong County |
| Name | Number | Bank | Mouth | Political subdivision | Source | Political subdivision |
| Conemaugh River | 0 | Right | | Saltsburg | | Johnstown |
| Stonycreek River | 1 | Left | | Johnstown | | Berlin |
| Little Conemaugh River | 2 | Right | | Johnstown | | Cresson Township, Cambria County |
| Hinckston Run | 3 | Right | | Johnstown | | Jackson Township, Cambria County |
| Elk Run | 4 | Left | | Lower Yoder Township, Cambria County | | Westmont |
| Saint Clair Run | 5 | Left | | Johnstown | | Lower Yoder Township, Cambria County |
| Strayer Run | 6 | Left | | Johnstown | | Lower Yoder Township, Cambria County |
| Laurel Run | 7 | Right | | West Taylor Township, Cambria County | | Jackson Township, Cambria County |
| Clark Run | 8 | Right | | East Wheatfield Township, Indiana County | | Jackson Township, Cambria County |
| Findley Run | 9 | Right | | East Wheatfield Township, Indiana County | | Jackson Township, Cambria County |
| Big Spring Run | 10 | Left | | St. Clair Township, Westmoreland County | | Lower Yoder Township, Cambria County |
| Sugar Run | 11 | Left | | St. Clair Township, Westmoreland County | | Lower Yoder Township, Cambria County |
| Baldwin Creek | 12 | Left | | St. Clair Township, Westmoreland County | | St. Clair Township, Westmoreland County |
| Shannon Run | 13 | Left | | St. Clair Township, Westmoreland County | | St. Clair Township, Westmoreland County |
| Richards Run | 14 | Right | | West Wheatfield Township, Indiana County | | West Wheatfield Township, Indiana County |
| Tubmill Creek | 15 | Left | | Bolivar | | Fairfield Township, Westmoreland County |
| Roaring Run | 16 | Right | | West Wheatfield Township, Indiana County | | West Wheatfield Township, Indiana County |
| Toms Run | 17 | Right | | Burrell Township, Indiana County | | Burrell Township, Indiana County |
| McGee Run | 18 | Left | | Derry Township, Westmoreland County | | Ligonier Township, Westmoreland County |
| Stony Run | 19 | Left | | Derry Township, Westmoreland County | | Derry Township, Westmoreland County |
| Blacklick Creek | 20 | Right | | Derry Township, Westmoreland County | | Buffington Township, Indiana County |
| Aultmans Run | 21 | Right | | Conemaugh Township, Indiana County | | Center Township, Indiana County |
| Roaring Run | 22 | Right | | Conemaugh Township, Indiana County | | Conemaugh Township, Indiana County |
| Spruce Run | 23 | Left | | Derry Township, Westmoreland County | | Derry Township, Westmoreland County |
| Conemaugh River Lake | 24 | - | | Conemaugh Township, Indiana County | | |
| Conemaugh Dam | 25 | - | | Derry Township, Westmoreland County | | |
| Conemaugh Dam | 26 | - | | Conemaugh Township, Indiana County | | |
| Boatyard Run | 27 | Left | | Derry Township, Westmoreland County | | Loyalhanna Township, Westmoreland County |
| Elders Run | 28 | Right | | Conemaugh Township, Indiana County | | Conemaugh Township, Indiana County |
| Name | Number | Bank | Mouth | Political subdivision | Source | Political subdivision |
| Loyalhanna Creek | 0 | Left | | Loyalhanna Township, Westmoreland County | | Donegal Township, Westmoreland County |
| White Oak Run | 1 | Left | | Cook Township, Westmoreland County | | Donegal Township, Westmoreland County |
| Phoebe Run | 2 | Right | | Cook Township, Westmoreland County | | Cook Township, Westmoreland County |
| Linn Run | 3 | Right | | Ligonier Township, Westmoreland County | | Cook Township, Westmoreland County |
| Rolling Rock Creek | 4 | Right | | Ligonier Township, Westmoreland County | | Ligonier Township, Westmoreland County |
| Laughlintown Run | 5 | Right | | Ligonier Township, Westmoreland County | | Ligonier Township, Westmoreland County |
| Zimmerman Run | 6 | Right | | Ligonier Township, Westmoreland County | | Ligonier Township, Westmoreland County |
| Mill Creek | 7 | Right | | Ligonier Township, Westmoreland County | | Ligonier Township, Westmoreland County |
| Twomile Run | 8 | Left | | Ligonier Township, Westmoreland County | | Cook Township, Westmoreland County |
| Coalpit Run | 9 | Right | | Ligonier Township, Westmoreland County | | Fairfield Township, Westmoreland County |
| Fourmile Run | 10 | Left | | Ligonier Township, Westmoreland County | | Donegal Township, Westmoreland County |
| Miller Run | 11 | Right | | Derry Township, Westmoreland County | | Derry Township, Westmoreland County |
| Ninemile Run | 12 | Left | | Unity Township, Westmoreland County | | Mount Pleasant Township, Westmoreland County |
| Monastery Run | 13 | Left | | Latrobe | | Unity Township, Westmoreland County |
| Unity Run | 14 | Left | | Latrobe | | Unity Township, Westmoreland County |
| Saxman Run | 15 | Right | | Derry Township, Westmoreland County | | Derry Township, Westmoreland County |
| Union Run | 16 | Right | | Derry Township, Westmoreland County | | Derry Township, Westmoreland County |
| Keystone Run | 17 | Right | | Unity Township, Westmoreland County | | Derry Township, Westmoreland County |
| Crabtree Creek | 18 | Left | | Salem Township, Westmoreland County | | Salem Township, Westmoreland County |
| Whitethorn Creek | 19 | Left | | Loyalhanna Township, Westmoreland County | | Salem Township, Westmoreland County |
| Serviceberry Run | 20 | Left | | Loyalhanna Township, Westmoreland County | | Salem Township, Westmoreland County |
| Loyalhanna Lake | 21 | - | | Loyalhanna Township, Westmoreland County | | |
| Loyalhanna Dam | 22 | - | | Loyalhanna Township, Westmoreland County | | |