San Francisco River
- Fucha River
- Rio de Flag
- San Francisco
- San Francisco Bay
- San Francisco Creek
- San Francisco Gotera, Morazán
- San Francisco River (Argentina)
- San Francisco River (Bogotá)
- San Francisco River (Gila River tributary)
- São Francisco River
- São Francisco River (Belo River tributary)
- São Francisco River (Jaciparaná River tributary)
- São Francisco River (Jequitinhonha River tributary)
- São Francisco River (Paraná)
- São Francisco River (Paraíba)
- São Francisco River (Rio de Janeiro)
- São Francisco River (São Miguel River tributary)
- Zamora River