| Route | Length
| Length
| From | Via | To | Notes |
| | NY 27A in Amityville | County Line Road | Joyce Avenue in East Farmingdale | | - |
| | NY 110 in Amityville | Dixon Avenue, Straight Path, & Seaman Neck Road | NY 231 in Half Hollow Hills | | - |
| | | NY 110 in Amityville | Dixon Avenue | NY 27 in Copiague | Former number; now part of CR 2 |
| | Perry Street in North Lindenhurst | Wellwood Avenue and Pinelawn Road | Walt Whitman Road in Melville | Southern terminus is at the Lindenhurst village line. | - |
| | NY 231 in Deer Park | Commack Road & Townline Road | Clay Pitts Road in Commack | | - |
| | NY 110 in Melville | Ruland Road & Colonial Springs Road | Town of Huntington/Town of Babylon town line in Melville | Unsigned and unrecognized by the SCDPW | - |
| | CR 108 | Rabro Drive in Hauppauge | NY 111 | Serves Hauppauge Industrial Park and Suffolk County government buildings | - |
| | CR 13 | Wicks Road in Brentwood | CR 67 | | - |
| | | I-495 / CR 101 in Yaphank | Yaphank Bypass | CR 21 in Middle Island | Unbuilt route |
| | NY 25A in Huntington | Greenlawn Road & Cuba Hill Road | CR 10 in Elwood | Unsigned and unrecognized by the SCDPW | - |
| | NY 25 in Elwood | Elwood Road | NY 25A in Northport | | - |
| | NY 108 in Cold Spring Harbor | Pulaski Road & East Northport Road | NY 25A in Kings Park | | - |
| | | CR 86 in Greenlawn | Pulaski Road | CR 10 in [East Northport, New York|Northport, New York|East Northport] | Former number; now part of CR 11 |
| | | NY 110 in Huntington Station | Pulaski Road | CR 86 in Greenlawn | Former number; now part of CR 11 |
| | | NY 108 in Cold Spring Harbor | Pulaski Road | NY 110 in Huntington Station | Former number; now part of CR 11 |
| | CR 1 in Amityville | Oak Street, Hoffman Avenue, & Railroad Avenue | CR 96 in West Babylon | Formerly CR 50B. Eastern terminus at Babylon village line. | - |
| | NY 27A in Bay Shore | Fifth Avenue and Crooked Hill Road | CR 4 in Commack | Segment between West Main Street and Clinton Street in Bay Shore is northbound only. Southbound only segment is Clinton Street. | - |
| | CR 13 | Clinton Avenue in Bay Shore | NY 27A | Southbound only segment of CR 13; formerly CR 53 | - |
| | NY 25 in Commack | Indian Head Road | NY 25A in Kings Park | | - |
| | NY 111 in Hauppauge | Maple Avenue | NY 25 / NY 25A in Smithtown | Was unsigned and unrecognized by the SCDPW. No longer recognized by NYSDOT. | - |
| | NY 25 in Village of the Branch | Terry Road, Smithtown Boulevard, Lake Shore Road, Portion Road, and Horseblock Road | CR 80 in South Haven | | - |
| | NY 27A in East Islip | Carleton Avenue and Wheeler Road | NY 111 in Hauppauge | Former alignment of NY 111 before 1966 | - |
| | CR 85 in Sayville | Broadway Avenue | CR 19 in Holbrook | Was unsigned and unrecognized by the SCDPW. No longer recognized by NYSDOT. | - |
| | CR 65 in Patchogue | West Avenue, Lake Street, Waverly Avenue, Patchogue–Holbrook Road, & Patchogue Road | CR 16 in Ronkonkoma | | - |
| | CR 18 | Main Street in Holbrook | CR 19 | Former segment of CR 19 through Holbrook. | - |
| | NY 25A in Port Jefferson | North Country Road | NY 25A in Sound Beach | Once included Lower Sheep Pasture and Sheep Pasture roads; Was unsigned and unrecognized by the SCDPW. No longer recognized by NYSDOT. | - |
| | CR 80 in Brookhaven | Yaphank Avenue, Main Street, Yaphank–Middle Island Road, and Rocky Point Road | NY 25A in Rocky Point | Discontinuous at Sunrise Highway in Brookhaven. | - |
| | | CR 21 / CR 56 | Horseblock Road Extension in Brookhaven | CR 80 | Former number; now part of CR 16 |
| | NY 25 in Jamesport | Manor Lane | Sound Avenue in Northville | Was unsigned and unrecognized by the SCDPW. No longer recognized by NYSDOT. | - |
| | | NY 25 in Aquebogue | Church Lane | Sound Avenue in Northville | Was unsigned and unrecognized by the SCDPW. No longer recognized by NYSDOT. |
| | | CR 21 in Middle Island | Longwood Road | CR 46 in Upton | Former number. |
| | | CR 80 in [Center Moriches, New York|Moriches, New York|Center Moriches] | Railroad Avenue, Wading River-Center Moriches Road, North Country Road, Sound Road | Long Island Sound in Wading River | Former number; realigned section was planned between I-495 exit 69 and west end of CR 80 and CR 98 |
| Route | Length
| Length
| From | Via | To | Notes |
| | | NY 25 in Mattituck | New Suffolk Lane and New Suffolk Road | NY 25 in Cutchogue | No longer recognized by SCDPW or NYSDOT. |
| | | NY 25 Truck in Mattituck | Middle Road | NY 25 in Greenport | Former number; now part of CR 48 |
| | | NY 25 Truck | Middle Road in Mattituck | Wickham Avenue | Former number; now part of CR 48 |
| | | Wickham Avenue | New Middle Road in Mattituck | Wickham Avenue near Elijah's Lane | Former number; now part of CR 48 |
| | NY 27 in North Lindenhurst | New Highway and Republic Road | CR 5 in Melville | Gap in route between Southern State Parkway and Babylon/Huntington town line. | - |
| | | CR 93 in Bohemia | Smithtown Avenue and Ronkonkoma Avenue | I-495 in Ronkonkoma | Served as a connector from the Long Island Expressway to Ronkonkoma Station (LIRR) and Long Island MacArthur Airport. No longer recognized by SCDPW or NYSDOT. |
| | | NY 27 | East Lake Drive in Montauk | Block Island Sound | Served as a connector from New York State Route 27 to Montauk Airport. No longer recognized by SCDPW or NYSDOT. |
| | CR 80 in Westhampton Beach | Old Riverhead Road | CR 104 in Riverside | | - |
| | Dune Road | Ponquogue Bridge in Hampton Bays | Lighthouse Road | Serves Ponquogue Bridge over Shinnecock Bay. Unsigned route. Used to extend northward to Montauk Highway via Foster Avenue, Shinnecock Road, & Ponquogue Avenue. | - |
| | | Good Ground Road | Ponquogue Avenue in Hampton Bays | CR 80 | Former number; was part of CR 32. |
| | | CR 89 | Foster Avenue, Ponquogue Bridge in Hampton Bays | Lighthouse Road | Former number; was part of CR 32 |
| | | NY 27 in Amagansett | Cranberry Hole Road, Promised Land Road, Lazy Point Road | NY 27 in Napeague | Served Napeague. No longer recognized from SCDPW or NYSDOT. |
| | | CR 45 in Amagansett | Abrahams Landing Road | CR 32 in Napeague | Former number; was part of CR 74. |
| | Village Line Road Town of Babylon | Deer Park Avenue | NY 231 in Deer Park | Southern terminus is at the Babylon village line. | - |
| | Northern State Parkway / NY 231 / CR 66 in Dix Hills | Deer Park Road, Park Avenue, & West Shore Road | Landing Road in Huntington | Serves Gold Star Beach Park in Huntington. | - |
| | | NY 25A in Huntington | Park Avenue, Sabbath Day Path | NY 110 in Halesite | Former number; now part of CR 35 |
| | | CR 35 in Dix Hills | Deer Park Road East | NY 25 in Elwood | Former number; now CR 66 |
| | | NY 110 in Halesite | Mill Dam Road, West Shore Road | West Neck Road near Lloyd Harbor | Former number; became part of CR 35 |
| | CR 80 in East Patchogue | South Country Road | CR 80 in Brookhaven | Former segment of Montauk Highway. Serves Bellport. | - |
| | | NY 114 | Manwaring Road in Shelter Island Heights | Shelter Island Sound | Former route. |
| | NY 27 / CR 39 / CR 39A in Southampton | North Sea Road | 500 feet north of Millstone Brook Road in North Sea. | Serves the hamlet of North Sea. Used to extend from North Sea to Sag Harbor. | - |
| | | CR 38 in Noyack | Noyack–Long Beach Road | NY 114 in North Haven | Former number; now CR 60 |
| | CR 80 in Shinnecock Hills | North Road & North Highway | NY 27 / CR 39A at David Whites Lane in Southampton | Most of the route overlaps with NY 27. Eastbound gap at Sunrise Highway terminus. | - |
| | NY 27 / CR 39 at David Whites Lane | Flying Point Road in Southampton | NY 27 at Hampton Road and Montauk Highway | Entire length overlaps with NY 27. Signed as CR 39. | - |
| | CR 39 / NY 27 | Canal Road East and Old North Highway in Shinnecock Hills | CR 39 / NY 27 | Former segment of CR 39 along Shinnecock Canal. Serves Meschutt Beach County Park. | - |
| | Cedar Street in East Hampton North | Three Mile Harbor Road | Copeces Lane in Springs | Southern terminus is on East Hampton village line. | - |
| | | | Three Mile Harbor Road | | Former number; now part of CR 40 |
| | CR 40 in East Hampton North | Springs–Fireplace Road | Woodbine Drive in Springs | | - |
| | Rocky Point Avenue | Shore Road in Shelter Island Heights | CR 115 | | - |
| | CR 73 in Riverhead | Northville Turnpike | Sound Avenue in Northville | | - |
| | | NY 114 in North Haven | North Haven Spur | NY 114 in Shelter Island | Unbuilt route; was to include South Shelter Island Bridge |
| | | NY 27 in Amagansett | Amagansett–Springs Road | CR 40 in Springs | No longer recognized by SCDPW or NYSDOT. |
| | CR 75 in Smith Point County Park | William Floyd Parkway | NY 25A in East Shoreham | Serves Smith Point County Park and Brookhaven National Laboratory. Was proposed to be an extension of Interstate 91 south from Connecticut in the 1970s. | - |
| | | Moriches–Middle Island Road in East Yaphank | William Floyd Parkway | South of NY 25 in Ridge | Former number; now part of CR 46 |
| | NY 27A in Copiague | Great Neck Road & Main Street | Nassau County line in North Amityville | | - |
| | NY 25 Truck in Mattituck | Middle Road | NY 25 in Greenport | Entire length overlaps with NY 25 Truck. The western terminus is 1000 feet west of Cox Neck Road. | - |
| | NY 27 | Edgemere Street and Flamingo Avenue in Montauk | CR 77 | | - |
| | NY 109 in Babylon | Park Avenue, Deer Park Avenue, Simon Street, John Street, & Union Boulevard | NY 27A in Great River | Unsigned from NY 109 to CR 82. | - |
| | | CR 85 in Oakdale | Union Boulevard Extension | CR 85 in Sayville | Formerly proposed eastern extension of CR 50 |
| | | NY 110 in Amityville | Oak Street, Hoffman Avenue, and Trolley Line Road | CR 34 in Babylon | Former number; now CR 12 |
| | | NY 109 in West Babylon | Park Avenue | CR 34 in Babylon | Formerly proposed western extension of CR 50 |
| Route | Length
| Length
| From | Via | To | Notes |
| | CR 80 in East Moriches | East Moriches–Riverhead Road & Center Drive South | NY 24 / CR 94 in Riverside | Serves Suffolk County Center - Riverhead. | - |
| | NY 27 / CR 39 | Sandy Hollow Road in Tuckahoe | CR 38 | | - |
| | | NY 27A | Clinton Avenue in Bay Shore | CR 13 | Former number; now CR 13A |
| | Sound Avenue | Hulse Landing Road in Wading River | Wildwood State Park | Once extended south to NY 25A. | - |
| | CR 80 | Eastport–Manor Road in Eastport | CR 51 | Originally extended northwest to I-495 exit 70. New signage implemented by NYSDOT on Interstate 495 at the Halsey Manor Road bridge shows a CR 55 shield for the road indicator signs. | - |
| | CR 16 in Brookhaven | Victory Avenue | CR 46 in Shirley | Serves Southaven County Park. | - |
| | NY 231 in Deer Park | Bay Shore Road, Howells Road, Roosevelt Street, and Third Avenue | CR 50 in Islip | | - |
| | | CR 57 | Third Avenue in Bay Shore | NY 27A | Former number; now part of CR 57 |
| | | CR 57 | Third Avenue in Bay Shore | NY 27 | Former number |
| | NY 25 in Riverhead | Old Country Road | NY 25 in Aquebogue | | - |
| | East Hampton village line | Long Lane in East Hampton North | Stephen Hands Path | Originally planned to run from NY 27 to NY 114 as a realignment of the latter. | - |
| | Noyack-Sag Harbor Road in Noyack | Noyack–Long Beach Road and Short Beach Road | NY 114 in North Haven | Formerly CR 38A | - |
| | CR 19 | Waverly Avenue in Holtsville | CR 99 WB Exit Ramp | Route is unsigned. Serves Internal Revenue Service location in Holtsville. | - |
| | CR 80 | Newtown Road in Canoe Place | Shinnecock Canal | Serves Shinnecock County Marina. | - |
| | CR 51 in Wildwood Lake | Lake Avenue & Peconic Avenue | NY 25 in Riverhead | Former segment of CR 51. Peconic Avenue portion unsigned from CR 94/CR 104/NY 24 to NY 25. | - |
| | | CR 36 in Bellport | Bellport Avenue and Station and Mill roads | NY 112 in Coram | No longer recognized by SCDPW or NYSDOT. Designation formerly used for Long Island Avenue between CR 101 and CR 21. |
| | CR 85 in Sayville | Middle Road, Atlantic Avenue, Weeks Street, River Avenue, and Division Street | CR 19 in Patchogue | | - |
| | CR 35 in Dix Hills | Deer Park Road East | NY 25 in Elwood | Formerly CR 35B | - |
| | Half Hollow Road in Huntington | Long Island Motor Parkway | CR 93 in Lake Ronkonkoma | Used to include Half Hollow Road in Dix Hills. | - |
| | | CR 3 | Half Hollow Road in Dix Hills | NY 231 | Former number; became part of CR 67 west of Long Island Motor Parkway. |
| | | NY 25A in Stony Brook | Main Street, Christian Avenue, Bailey Hollow Road, and Ridgeway Avenue | NY 25A in Setauket | Ridgeway Avenue portion was once part of NY 25A. Route no longer recognized by SCDPW or NYSDOT. |
| | NY 114 in South Shelter Island | Cartwright Road | Ram Island Road in Shelter Island | | - |
| | | NY 27 in Montauk | South Lake Drive | CR 77 in Montauk Lake | Former number. |
| | CR 80 | Old Country Road in Eastport | Westhampton Beach village line in Southampton | | - |
| | CR 80 in Westhampton | Mill Road | Oneck Lane on the Westhampton Beach village line | Route is unsigned. | - |
| | | CR 80 | Atlantic Avenue in East Moriches | Moriches Bay | Former number |
| | NY 25 | Roanoke Avenue in Riverhead | CR 58 | Signs approaching the roundabout from Old Country Road to Roanoke Avenue say the route continues north from CR 58, but no CR 73 shields exist north of the roundabout. | - |
| | | CR 58 in Riverhead | Roanoke Avenue | Sound Avenue in Roanoke | Former number; was part of CR 73. |
| | | NY 27 in Amagansett | Promised Land Road Extension | NY 27 in East Hampton Beach | Unbuilt route; was to replace much of CR 33 |
| | CR 46 in Fire Island National Seashore | Fire Island Beach Road | Toll booth at Smith Point County Park | Formerly proposed segment of Ocean Parkway. Used to be signed, but all signs have been removed. | - |