Franhueberia gerriennei is preserved as a cellular permineralization within a single cobble and consists of a small axis with a centrarch protostele. The secondary tissues of the vascular cambium contain extinct P-type cell walls. This type of cell wall consisted of scalariform bordered pits and multiaperturate pit membranes. The secondary vascular tissues in Franhueberia gerriennei represent one of the oldest examples of secondary growth. Wood or secondary xylem with P-type cell walls have also been observed in the slightly older Armoricaphyton chateaupannense from western France and in an unnamed basal euphyllophyte from late Emsian outcrops of the Campbellton Formation in New Brunswick, Canada.
While the pattern of branching and fertile structures such as sporangia are unknown, Franhueberia is most similar anatomically to other basal euphyllophytes like Armoricaphyton chateaupannense and Psilophyton dawsonii. However, certain features of the primary and secondary vascular tissues such as the diameter of the primary xylem cylinder and ray anatomy sets Franhueberiaapart from these other species. Given these and other differences combined with a current lack of a complete understanding of the whole plant, Franhueberia is currently classified as Euphyllophytinaincertae sedis.