FAM227B
FAM227B is a protein that in humans is encoded by FAM227B gene. FAM227B stands for family with sequence similarity 227 member B and encodes protein FAM227B of the same name. Its aliases include C15orf33, MGC57432 and FLJ23800.
Gene
FAM227B is located at 15q21.2 and contains 24 exons. The current size determined for FAM227B is 293,961 base pairs. Neighbors of FAM227B on chromosome fifteen include: "ribosomal protein L15 pseudogene", "galactokinase 2", "RNA, 7SL, cytoplasmic 307, pseudogene", "signal peptide peptidase like 2A pseudogene", "fibroblast growth factor 7", "uncharacterized LOC105370811", "DTW domain containing 1", and "ring finger protein, LIM domain interacting pseudogene 3".Transcript
There are 30 isoforms of FAM227B and one paralog, FAM227A. The conserved domains in these isoforms are of various sizes and encode the protein FWWh of unknown function, which all contain the distinctive motif FWW with a hydrophobic residue h. The main isoform used for analysis of FAM227B is isoform 1. The next most reliable isoform of FAM227B is isoform 2. The second isoform is shorter and has a distinct C-terminus.Below are cartoons depicting the different lengths and cutting patterns of the isoforms*:
Protein
The primary sequence for FAM227B is isoform 1 with accession number: NP_689860.2. It is 508 amino acids long. There are 30 isoforms. The molecular weight is 59.9kD and the isoelectric point is predicted to be high, around 10. Compared to other proteins in humans, FAM227B has high abundance of Phenylalanine and Glycine and low abundance levels of Valine. The protein is predicted to be in the nuclear region of the cell. There is a bipartite nuclear localization signal at RKLERYGEFLKKYHKKK, and three other nuclearization signals at HKKK, KKKK, and PKKTKIK. There is also a vacuolar targeting motif at TLPI. An FWWh region, where h signifies hydrophobic, runs from amino acids 135-296 in Homo sapiens FAM227B isoform 1. The function of this region is still unknown.Secondary structure
The secondary structure is predicted to be made up of alpha helices mainly and coiled coilsPost translational modifications
Phosphorylation is the main post-translational modification predicted for FAM227B due to its predicted localization to the nucleus. There are many experimentally predicted phosphorylation sites, the most highly rated included in the conceptual translation. Glycosylation sites and SUMOylation sites were also predicted.Expression
FAM227B is most highly expressed in the testis at 1.983 +/- 0.404 RPKM, in the kidney at 1.408 +/- 0.152 RPKM, in the adrenal at 1.177 +/- 0.088 RPKM, and in the thyroid 1.133 +/- 0.165 RPKM. It is also expressed to a lesser degree in the appendix, bone marrow, brain, colon, duodenum, endometrium, esophagus, fat, gall bladder, heart, liver, lung, lymph node, ovary, pancreas, placenta, prostate, salivary gland, skin, small intestine, spleen, stomach, and urinary bladderFunction
Currently, the function of FAM227B has not been characterizedProtein-protein interactions
RNF123 was found to be an interacting protein of FAM227B through Affinity Capture – MS. RAB3A was found to be an interacting protein of FAM227B through tandem affinity purification.Subcellular localization
Current studies have determined the location of this gene to be in the nuclear region of the cell.Homology and evolution
Paralogs: FAM227AOrthologs: FAM227B is present in Deuterostomia and Protostomia, dating as far back as porifera. FAM227B is not present in choanoflagellates, and gene alignment sequences have shown that FAM227B is a rapidly evolving gene due to its evolution trajectory compared to cytochrome c and fibrinogen alpha.