He was drafted as the third overall pick of the Milwaukee Wave in the 2004Major [Indoor Soccer League (2001–2008)|Major Indoor Soccer League] Draft. He was then traded to the California Cougars where he would spend the next season and a half. He did not gain his first start until March 2006, when starter Jim Larkin was injured.
Jakubek was waived at the end of the 2006 season, and signed for USL-1 expansion franchise California Victory in early 2007, appearing five times for the team during the season.