Boltenia echinata is a solitary sea squirt with a globose or ovoid body up to in diameter. The two small siphons are four-lobed and are near the top of the animal. The base is attached to the substrate over a large area. The test is tough and rubbery and bears radially-branching spines, which resemble hairs. The body colour is brown and the siphons may be tinged red, but the sea squirt is very inconspicuous because it is usually covered with silt.