Amagatsuji Station is served by the Kashihara Line and is 1.6 kilometers from the starting point of the line at and 36.2 kilometers from.
Layout
The station consists two opposed side platforms and two tracks. The effective length of the platform is four cars. The ticket gates and concourse are underground, while the platforms are above ground. There are two ticket gates, one on the east side and one on the west side. The entrances and exits are on the Yamato-Saidaiji side of both platforms. The station is unattended.