2006 Metro Atlantic Athletic Conference baseball tournament
The 2006 Metro Atlantic Athletic Conference baseball tournament took place from May 25 through 27, 2006. The top four regular season finishers of the league's teams met in the double-elimination tournament held at Dutchess Stadium in Wappingers Falls, New York. won their first tournament championship and earned the conference's automatic bid to the 2006 NCAA Division I baseball tournament.
Seeding
The top four teams were seeded one through four based on their conference winning percentage. They then played a double-elimination tournament.| Team | W | L | PCT | GB | Seed |
| 21 | 5 | – | 1 | ||
| 17 | 9 | 4 | 2 | ||
| 17 | 10 | 4.5 | 3 | ||
| 17 | 10 | 4.5 | 4 | ||
| 16 | 10 | 5 | – | ||
| 12 | 14 | 9 | – | ||
| 12 | 15 | 9.5 | – | ||
| 9 | 18 | 12.5 | – | ||
| 8 | 18 | 13 | – | ||
| 3 | 23 | 18 | – |
All-Tournament Team
The following players were named to the All-Tournament Team.| Pos. | Name | School |
| P | Bobby Blevins | Le Moyne |
| P | Chris Cody | Manhattan |
| IF | Andrew MacNevin | Niagara |
| IF | Steve Crawford | Le Moyne |
| IF | Michael Affronti | Le Moyne |
| IF | Dom Lombardi | Manhattan |
| IF | Nick Derba | Manhattan |
| OF | Jeff Vincent | Niagara |
| OF | Jamie Rose | Le Moyne |
| OF | Eric Nieto | Manhattan |
| DH | John Fitzpatrick | Manhattan |