2006 America East Conference baseball tournament
The 2006 America East Conference baseball tournament took place from May 25 through 27 at Centennial Field in Burlington, Vermont. The top four regular season finishers of the league's seven teams qualified for the double-elimination tournament. In the championship game, third-seeded Maine defeated first-seeded Stony Brook, 5-3, to win its fourth tournament championship. As a result, Maine received the America East's automatic bid to the 2006 NCAA tournament.
Seeding
The top four finishers from the regular season were seeded one through four based on conference winning percentage only. They then played in a double-elimination format. In the first round, the one and four seeds were matched up in one game, while the two and three seeds were matched up in the other.| Team | W | L | Pct. | GB | Seed |
| Vermont | 16 | 8 | .667 | – | 1 |
| Stony Brook | 13 | 8 | .619 | 1.5 | 2 |
| Maine | 13 | 9 | .591 | 2 | 3 |
| Albany | 12 | 10 | .545 | 3 | 4 |
| Binghamton | 12 | 11 | .522 | 3.5 | – |
| Hartford | 8 | 16 | .333 | 8 | – |
| UMBC | 5 | 17 | .227 | 10 | – |
All-Tournament Team
The following players were named to the All-Tournament Team.| Player | Team |
| Mark Ostrander | Maine |
| AJ Balsinde | Maine |
| Joel Barrett | Maine |
| Sean Parker | Maine |
| Mike Powers | Maine |
| Jon Pasieka | Stony Brook |
| Andres Perez | Stony Brook |
| Matt Restivo | Stony Brook |
| Jason Carey | Vermont |
| Steve Wyland | Albany |